Natural language processing in narrative breast radiology reporting in University Malaya Medical Centre.

Journal: Health informatics journal
Published Date:

Abstract

Radiology reporting is narrative, and its content depends on the clinician's ability to interpret the images accurately. A tertiary hospital, such as anonymous institute, focuses on writing reports narratively as part of training for medical personnel. Nevertheless, free-text reports make it inconvenient to extract information for clinical audits and data mining. Therefore, we aim to convert unstructured breast radiology reports into structured formats using natural language processing (NLP) algorithm. This study used 327 de-identified breast radiology reports from the anonymous institute. The radiologist identified the significant data elements to be extracted. Our NLP algorithm achieved 97% and 94.9% accuracy in training and testing data, respectively. Henceforth, the structured information was used to build the predictive model for predicting the value of the BIRADS category. The model based on random forest generated the highest accuracy of 92%. Our study not only fulfilled the demands of clinicians by enhancing communication between medical personnel, but it also demonstrated the usefulness of mineable structured data in yielding significant insights.

Authors

  • Wee Ming Tan
    Data Science and Bioinformatics Laboratory, Institute of Biological Sciences, Faculty of Science, Universiti Malaya, Kuala Lumpur, Malaysia.
  • Wei Lin Ng
    Department of Biomedical Imaging, Faculty of Medicine, University of Malaya, Kuala Lumpur, 50603, Malaysia.
  • Mogana Darshini Ganggayah
    Data Science and Bioinformatics Laboratory, Institute of Biological Sciences, Faculty of Science, University of Malaya, 50603, Kuala Lumpur, Malaysia.
  • Victor Chee Wai Hoe
    Department of Social and Preventive Medicine, Universiti Malaya, Kuala Lumpur, Malaysia.
  • Kartini Rahmat
    Department of Biomedical Imaging, Faculty of Medicine, University of Malaya, Kuala Lumpur, Malaysia. Electronic address: katt_xr2000@yahoo.com.
  • Hana Salwani Zaini
    Department of Information Technology, University of Malaya Medical Centre, Kuala Lumpur, Malaysia.
  • Nur Aishah Mohd Taib
    Department of Surgery, Faculty of Medicine, Universiti Malaya, Kuala Lumpur, Malaysia.
  • Sarinder Kaur Dhillon
    Data Science and Bioinformatics Laboratory, Institute of Biological Sciences, Faculty of Science, Universiti Malaya, Kuala Lumpur, Malaysia.