Exploiting the structure of biochemical pathways to investigate dynamical properties with neural networks for graphs.
Journal:
Bioinformatics (Oxford, England)
Published Date:
Nov 1, 2023
Abstract
MOTIVATION: Dynamical properties of biochemical pathways (BPs) help in understanding the functioning of living cells. Their in silico assessment requires simulating a dynamical system with a large number of parameters such as kinetic constants and species concentrations. Such simulations are based on numerical methods that can be time-expensive for large BPs. Moreover, parameters are often unknown and need to be estimated.