Predicting postoperative visual acuity in epiretinal membrane patients and visualization of the contribution of explanatory variables in a machine learning model.

Journal: PloS one
PMID:

Abstract

BACKGROUND: The purpose of this study was to develop a model that can predict the postoperative visual acuity in eyes that had undergone vitrectomy for an epiretinal membrane (ERM). The Light Gradient Boosting Machine (LightGBM) was used to evaluate the accuracy of the prediction and the contribution of the explanatory variables. Two models were designed to predict the postoperative visual acuity in 67 ERM patients. Model 1 used the age, sex, affected eye, axial length, preoperative visual acuity, Govetto's classification stage, and OCT-derived vector information as features to predict the visual acuity at 1, 3, and 6 months postoperatively. Model 2 incorporated the early postoperative visual acuity as an additional variable to predict the visual acuity at 3, and 6 months postoperatively. LightGBM with 100 iterations of 5-fold cross-validation was used to tune the hyperparameters and train the model. This involved addressing multicollinearity and selecting the explanatory variables. The generalized performance of these models was evaluated using the root mean squared error (RMSE) in a 5-fold cross-validation, and the contributions of the explanatory variables were visualized using the average Shapley Additive exPlanations (SHAP) values.

Authors

  • Akiko Irie-Ota
    Department of Ophthalmology, Mie University Graduate School of Medicine, Tsu, Mie, Japan.
  • Yoshitsugu Matsui
    Department of Ophthalmology, Mie University Graduate School of Medicine, Tsu, Japan.
  • Koki Imai
    Department of Electrical and Electronic Engineering, Mie University, Tsu, Mie, Japan.
  • Yoko Mase
    Department of Ophthalmology, Mie University Graduate School of Medicine, Tsu, Mie, Japan.
  • Keiichiro Konno
    Department of Ophthalmology, Mie University Graduate School of Medicine, Tsu, Mie, Japan.
  • Taku Sasaki
    Department of Ophthalmology, Mie University Graduate School of Medicine, Tsu, Mie, Japan.
  • Shinichiro Chujo
    Department of Ophthalmology, Mie University Graduate School of Medicine, Tsu, Mie, Japan.
  • Hisashi Matsubara
    Department of Ophthalmology, Mie University Graduate School of Medicine, Tsu, Mie, Japan.
  • Hiroharu Kawanaka
    Department of Electrical and Electronic Engineering, Mie University, Tsu, Mie, Japan.
  • Mineo Kondo
    Department of Ophthalmology, Mie University Graduate School of Medicine, Tsu, Mie, Japan.