PandaOmics: An AI-Driven Platform for Therapeutic Target and Biomarker Discovery.

Journal: Journal of chemical information and modeling
Published Date:

Abstract

PandaOmics is a cloud-based software platform that applies artificial intelligence and bioinformatics techniques to multimodal omics and biomedical text data for therapeutic target and biomarker discovery. PandaOmics generates novel and repurposed therapeutic target and biomarker hypotheses with the desired properties and is available through licensing or collaboration. Targets and biomarkers generated by the platform were previously validated in both and studies. PandaOmics is a core component of Insilico Medicine's Pharma.ai drug discovery suite, which also includes Chemistry42 for the generation of novel small molecules, and inClinico─a data-driven multimodal platform that forecasts a clinical trial's probability of successful transition from phase 2 to phase 3. In this paper, we demonstrate how the PandaOmics platform can efficiently identify novel molecular targets and biomarkers for various diseases.

Authors

  • Petrina Kamya
    Insilico Medicine Canada Inc., 3710-1250 René-Lévesque Blvd W, Montreal, Quebec, H3B 4W8 Canada.
  • Ivan V Ozerov
    Insilico Medicine Hong Kong Ltd., Hong Kong Science and Technology Park, New Territories, Hong Kong, China.
  • Frank W Pun
    Insilico Medicine Hong Kong Ltd., Hong Kong Science and Technology Park, New Territories, Hong Kong, China.
  • Kyle Tretina
    Insilico Medicine Hong Kong Limited, Hong Kong Science and Technology Park, Hong Kong.
  • Tatyana Fokina
    Insilico Medicine Hong Kong Limited, Hong Kong Science and Technology Park, Hong Kong.
  • Shan Chen
    National Academy of Economic Security, Beijing Jiaotong University, Beijing 100044, China.
  • Vladimir Naumov
    Insilico Medicine, Pak Shek Kok, New Territories, Hong Kong.
  • Xi Long
    1Department of Electrical EngineeringEindhoven University of Technology5612AZEindhovenThe Netherlands.
  • Sha Lin
    Insilico Medicine Shanghai Limited, Suite 901, Tower C, Changtai Plaza, 2889 Jinke Road, Pudong New District, Shanghai 201203, China.
  • Mikhail Korzinkin
    Insilico Medicine Hong Kong Limited, Hong Kong Science and Technology Park, Hong Kong.
  • Daniil Polykovskiy
    Insilico Medicine , Baltimore , Maryland 21218 , United States.
  • Alex Aliper
    Pharma.AI Department , Insilico Medicine, Inc. , Baltimore , Maryland 21218 , United States.
  • Feng Ren
    Insilico Medicine Hong Kong Ltd., Hong Kong Science and Technology Park, New Territories, Hong Kong, China.
  • Alex Zhavoronkov
    Pharmaceutical Artificial Intelligence Department, Insilico Medicine, Inc., Emerging Technology Centers, Johns Hopkins University at Eastern, Baltimore, Maryland, USA.