Classifying breast cancer subtypes on multi-omics data via sparse canonical correlation analysis and deep learning.

Journal: BMC bioinformatics
PMID:

Abstract

BACKGROUND: Classifying breast cancer subtypes is crucial for clinical diagnosis and treatment. However, the early symptoms of breast cancer may not be apparent. Rapid advances in high-throughput sequencing technology have led to generating large number of multi-omics biological data. Leveraging and integrating the available multi-omics data can effectively enhance the accuracy of identifying breast cancer subtypes. However, few efforts focus on identifying the associations of different omics data to predict the breast cancer subtypes.

Authors

  • Yiran Huang
    School of Computer and Electronics Information, Guangxi University, Nanning, 530004, China.
  • Pingfan Zeng
    School of Computer and Electronics Information, Guangxi University, Nanning, 530004, China.
  • Cheng Zhong
    Lawrence Berkeley National Laboratory, Berkeley CA USA.