Learning vs. understanding: When does artificial intelligence outperform process-based modeling in soil organic carbon prediction?

Journal: New biotechnology
Published Date:

Abstract

In recent years, machine learning (ML) algorithms have gained substantial recognition for ecological modeling across various temporal and spatial scales. However, little evaluation has been conducted for the prediction of soil organic carbon (SOC) on small data sets commonly inherent to long-term soil ecological research. In this context, the performance of ML algorithms for SOC prediction has never been tested against traditional process-based modeling approaches. Here, we compare ML algorithms, calibrated and uncalibrated process-based models as well as multiple ensembles on their performance in predicting SOC using data from five long-term experimental sites (comprising 256 independent data points) in Austria. Using all available data, the ML-based approaches using Random forest and Support vector machines with a polynomial kernel were superior to all process-based models. However, the ML algorithms performed similar or worse when the number of training samples was reduced or when a leave-one-site-out cross validation was applied. This emphasizes that the performance of ML algorithms is strongly dependent on the data-size related quality of learning information following the well-known curse of dimensionality phenomenon, while the accuracy of process-based models significantly relies on proper calibration and combination of different modeling approaches. Our study thus suggests a superiority of ML-based SOC prediction at scales where larger datasets are available, while process-based models are superior tools when targeting the exploration of underlying biophysical and biochemical mechanisms of SOC dynamics in soils. Therefore, we recommend applying ensembles of ML algorithms with process-based models to combine advantages inherent to both approaches.

Authors

  • Luca G Bernardini
    FFoQSI, Technopark 1/Haus D, 3430 Tulln an der Donau, Austria.
  • Christoph Rosinger
    Institute of Agronomy, University of Natural Resources and Life Sciences (BOKU) Vienna, Konrad Lorenz-Straße 24, 3430 Tulln an der Donau, Austria; Institute of Soil Research, University of Natural Resources and Life Sciences (BOKU) Vienna, Peter Jordan-Straße 82, 1190 Vienna, Austria. Electronic address: christoph.rosinger@boku.ac.at.
  • Gernot Bodner
    Division of Agronomy, Department of Crop Sciences, University of Natural Resources and Life Sciences, Vienna (BOKU), 3430, Tulln an der Donau, Austria.
  • Katharina M Keiblinger
    Institute of Soil Research, University of Natural Resources and Life Sciences (BOKU) Vienna, Peter Jordan-Straße 82, 1190 Vienna, Austria.
  • Emma Izquierdo-Verdiguier
    Institute of Geomatics, University of Natural Resources and Life Sciences (BOKU) Vienna, Peter Jordan-Straße 82, 1190 Vienna, Austria.
  • Heide Spiegel
    Austrian Agency for Health and Food Safety (AGES), Institute for Soil Health and Plant Nutrition, Spargelfeldstraße 191, 1226 Vienna, Austria.
  • Carl O Retzlaff
    Human-Centered AI Lab, Institute of Forest Engineering, University of Natural Resources and Life Sciences (BOKU) Vienna, Peter Jordan-Straße 82, 1190 Vienna, Austria.
  • Andreas Holzinger
    Human-Centered AI Lab, Medical University of Graz, Graz, Austria.