A Semi-Supervised Learning Framework for Classifying Colorectal Neoplasia Based on the NICE Classification.

Journal: Journal of imaging informatics in medicine
Published Date:

Abstract

Labelling medical images is an arduous and costly task that necessitates clinical expertise and large numbers of qualified images. Insufficient samples can lead to underfitting during training and poor performance of supervised learning models. In this study, we aim to develop a SimCLR-based semi-supervised learning framework to classify colorectal neoplasia based on the NICE classification. First, the proposed framework was trained under self-supervised learning using a large unlabelled dataset; subsequently, it was fine-tuned on a limited labelled dataset based on the NICE classification. The model was evaluated on an independent dataset and compared with models based on supervised transfer learning and endoscopists using accuracy, Matthew's correlation coefficient (MCC), and Cohen's kappa. Finally, Grad-CAM and t-SNE were applied to visualize the models' interpretations. A ResNet-backboned SimCLR model (accuracy of 0.908, MCC of 0.862, and Cohen's kappa of 0.896) outperformed supervised transfer learning-based models (means: 0.803, 0.698, and 0.742) and junior endoscopists (0.816, 0.724, and 0.863), while performing only slightly worse than senior endoscopists (0.916, 0.875, and 0.944). Moreover, t-SNE showed a better clustering of ternary samples through self-supervised learning in SimCLR than through supervised transfer learning. Compared with traditional supervised learning, semi-supervised learning enables deep learning models to achieve improved performance with limited labelled endoscopic images.

Authors

  • Yu Wang
    Clinical and Technical Support, Philips Healthcare, Shanghai, China.
  • Haoxiang Ni
    Department of Gastroenterology, The First Affiliated Hospital of Soochow University, # 899 Pinghai St., Suzhou, Jiangsu, 215006, China.
  • Jielu Zhou
    Department of Gastroenterology, The First Affiliated Hospital of Soochow University, # 899 Pinghai St., Suzhou, Jiangsu, 215006, China.
  • Lihe Liu
    Department of Gastroenterology, The First Affiliated Hospital of Soochow University, # 899 Pinghai St., Suzhou, Jiangsu, 215006, China.
  • Jiaxi Lin
    Department of Gastroenterology, the First Affiliated Hospital of Soochow University, Suzhou, 215006, Jiangsu, China.
  • Minyue Yin
    Department of Gastroenterology, the First Affiliated Hospital of Soochow University, Suzhou, 215006, Jiangsu, China.
  • Jingwen Gao
    Department of Gastroenterology, the First Affiliated Hospital of Soochow University, Suzhou, 215006, Jiangsu, China.
  • Shiqi Zhu
    Department of Gastroenterology, The First Affiliated Hospital of Soochow University, 188 Shizi Street, Suzhou , Jiangsu, 215000, China.
  • Qi Yin
    Key Laboratory of Environmental and Applied Microbiology, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China; Environmental Microbiology Key Laboratory of Sichuan Province, Chengdu 610041, China.
  • Jinzhou Zhu
    Department of Gastroenterology, The First Affiliated Hospital of Soochow University, Suzhou 215000, China.
  • Rui Li
    Department of Oncology, Xiyuan Hospital, China Academy of Chinese Medical Science, Beijing, China.