Harnessing artificial intelligence-driven approach for enhanced indole-3-acetic acid from the newly isolated Streptomyces rutgersensis AW08.

Journal: Environmental research
PMID:

Abstract

Indole-3-acetic acid (IAA) derived from Actinobacteria fermentations on agro-wastes constitutes a safer and low-cost alternative to synthetic IAA. This study aims to select a high IAA-producing Streptomyces-like strain isolated from Lake Oubeira sediments (El Kala, Algeria) for further investigations (i.e., 16S rRNA gene barcoding and process optimization). Subsequently, artificial intelligence-based approaches were employed to maximize IAA bioproduction on spent coffee grounds as high-value-added feedstock. The specificity was the novel application of the Limited-Memory Broyden-Fletcher-Goldfarb-Shanno Box (L-BFGS-B) optimization algorithm. The new strain AW08 was a significant producer of IAA (26.116 ± 0.61 μg/mL) and was identified as Streptomyces rutgersensis by 16S rRNA gene barcoding and phylogenetic inquiry. The empirical data involved the inoculation of AW08 in various cultural conditions according to a four-factor Box Behnken Design matrix (BBD) of Response surface methodology (RSM). The input parameters and regression equation extracted from the RSM-BBD were the basis for implementing and training the L-BFGS-B algorithm. Upon training the model, the optimal conditions suggested by the BBD and L-BFGS-B algorithm were, respectively, L-Trp (X1) = 0.58 %; 0.57 %; T° (X2) = 26.37 °C; 28.19 °C; pH (X3) = 7.75; 8.59; and carbon source (X4) = 30 %; 33.29 %, with the predicted response IAA (Y) = 152.8; 169.18 μg/mL). Our findings emphasize the potential of the multifunctional S. rutgersensis AW08, isolated and reported for the first time in Algeria, as a robust producer of IAA. Validation investigations using the bioprocess parameters provided by the L-BFGS-B and the BBD-RSM models demonstrate the effectiveness of AI-driven optimization in maximizing IAA output by 5.43-fold and 4.2-fold, respectively. This study constitutes the first paper reporting a novel interdisciplinary approach and providing insights into biotechnological advancements. These results support for the first time a reasonable approach for valorizing spent coffee grounds as feedstock for sustainable and economic IAA production from S. rutgersensis AW08.

Authors

  • Wiem Alloun
    Laboratory of Mycology, Biotechnology and Microbial Activity (LaMyBAM), Department of Applied Biology, Constantine 1 University, BP, 325, Aïn El Bey, Constantine, 25017, Algeria. Electronic address: wiemalloun@gmail.com.
  • Mohammed Berkani
    Laboratoire Biotechnologies, Ecole Nationale Supérieure de Biotechnologie, Ville Universitaire Ali Mendjeli, BP E66 25100, Constantine, Algeria. Electronic address: m.berkani@ensbiotech.edu.dz.
  • Amin Shavandi
    3BIO-BioMatter Unit, École Polytechnique de Bruxelles, Université Libre de Bruxelles (ULB), Avenue F.D. Roosevelt, 50-CP 165/61, 1050, Brussels, Belgium.
  • Adlène Beddiar
    Department of Web Development and Artificial Intelligence, University of Mohammed Cherif Messaadia, Souk-Ahras, Algeria.
  • Marika Pellegrini
    Department of Life, Health and Environmental Sciences, University of L'Aquila, Coppito, 67100 L'Aquila, Italy.
  • Matteo Garzia
    Department of Life, Health and Environmental Sciences, University of L'Aquila, Coppito, 67100 L'Aquila, Italy.
  • Delloula Lakhdari
    Biotechnology Laboratory, National Higher School of Biotechnology, Ali Mendjeli University City, BP E66, 25100, Constantine, Algeria; Research Center in Industrial Technologies CRTI, P.O. Box 64, Cheraga 16014, Algiers, Algeria.
  • Sharanabasava V Ganachari
    Center for Energy and Environment, School of Advanced Sciences, KLE Technological University, Hubballi, Karnataka, 580 031, India.
  • Tejraj M Aminabhavi
    Department of Chemistry, Karnatak University, Dharwad, 580 003, India. Electronic address: aminabhavit@gmail.com.
  • Yasser Vasseghian
    Institute of Research and Development, Duy Tan University, Da Nang 550000, Vietnam; The Faculty of Environmental and Chemical Engineering, Duy Tan University, Da Nang 550000, Vietnam. Electronic address: yasservasseghian@duytan.edu.vn.
  • Uday Muddapur
    Department of Biotechnology, KLE Technological University, Hubballi, Karnataka, 580 031, India.
  • Noreddine Kacem Chaouche
    Laboratory of Mycology, Biotechnology and Microbial Activity (LaMyBAM), Department of Applied Biology, Constantine 1 University, BP, 325, Aïn El Bey, Constantine, 25017, Algeria.