AIMC Topic: Phylogeny
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Integrative machine learning and RT-qPCR analysis identify key stress-responsive genes in Thermus thermophilus HB8.
Genetica
Aug 20, 2025
Bacteria are constantly exposed to diverse environmental stresses, necessitating complex adaptive mechanisms for survival. Thermus thermophilus, a thermophilic extremophile, serves as an excellent model for investigating these responses due to its re...
Species richness is an important mediator of multifunctionality changes in Hobq desert shrub ecosystem.
Scientific reports
Aug 9, 2025
Studying the biodiversity and multifunctionality relationships of the Hobq Desert shrub ecosystem and its response to environmental factors is crucial for ecological restoration in the region. In this study, we examined variations in biodiversity and...
Whole genome resequencing reveals genetic diversity, population structure, and selection signatures in local duck breeds.
BMC genomics
Aug 8, 2025
BACKGROUND: Shandong's local duck breeds are renowned for their outstanding egg-laying performance and are regarded as valuable assets within China's waterfowl germplasm. Understanding the genetic characteristics of these populations, along with moni...
Skin Microbiome alterations in heroin users revealed by full-length 16S rRNA sequencing.
BMC microbiology
Jul 30, 2025
BACKGROUND: Identifying key characteristics of unknown suspects, such as age, height, and drug use, is essential for advancing forensic investigations.
Advancing fungal phylogenetics: integrating modern sequencing, dark taxa discovery, and machine learning.
Archives of microbiology
Jul 11, 2025
The study of fungal genetics has undergone transformative advancements in recent decades, profoundly reshaping our understanding of fungal diversity, evolution, and pathogenesis. This review synthesizes cutting-edge molecular techniques revolutionizi...
Morphological traits and machine learning for genetic lineage prediction of two reef-building corals.
PloS one
Jun 18, 2025
Integrating multiple lines of evidence that support molecular taxonomy analysis has proven to be a robust method for species delimitation in scleractinian corals. However, morphology often conflicts with genetic approaches due to high phenotypic plas...
Genome-wide annotation and comparative analysis of miniature inverted-repeat transposable elements (MITEs) in six pear species.
Planta
Jun 16, 2025
Through multi-faceted comparative analysis of MITEs across six pear genomes, we revealed their distribution patterns, functional impacts and their significant role as genomic origins for miRNAs, with copy number being the most critical factor for MIT...
Pollen morphology, deep learning, phylogenetics, and the evolution of environmental adaptations in Podocarpus.
The New phytologist
Jun 3, 2025
Podocarpus pollen morphology is shaped by both phylogenetic history and the environment. We analyzed the relationship between pollen traits quantified using deep learning and environmental factors within a comparative phylogenetic framework. We inves...
LucaPCycle: Illuminating microbial phosphorus cycling in deep-sea cold seep sediments using protein language models.
Nature communications
May 26, 2025
Phosphorus is essential for life and critically influences marine productivity. Despite geochemical evidence of active phosphorus cycling in deep-sea cold seeps, the microbial processes involved remain poorly understood. Traditional sequence-based se...
Genome evolution of Kaposi sarcoma-associated herpesvirus (KSHV).
Journal of virology
Apr 16, 2025
UNLABELLED: Kaposi sarcoma (KS) is the most common cancer in people living with HIV (PLWH), particularly in sub-Saharan Africa (SSA), where Kaposi sarcoma herpesvirus (KSHV or human herpesvirus 8 [HHV-8]) is endemic. In KSHV endemic areas, the overal...
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