Encoding Enhanced Complex CNN for Accurate and Highly Accelerated MRI.

Journal: IEEE transactions on medical imaging
Published Date:

Abstract

Magnetic resonance imaging (MRI) using hyperpolarized noble gases provides a way to visualize the structure and function of human lung, but the long imaging time limits its broad research and clinical applications. Deep learning has demonstrated great potential for accelerating MRI by reconstructing images from undersampled data. However, most existing deep convolutional neural networks (CNN) directly apply square convolution to k-space data without considering the inherent properties of k-space sampling, limiting k-space learning efficiency and image reconstruction quality. In this work, we propose an encoding enhanced (EN2) complex CNN for highly undersampled pulmonary MRI reconstruction. EN2 complex CNN employs convolution along either the frequency or phase-encoding direction, resembling the mechanisms of k-space sampling, to maximize the utilization of the encoding correlation and integrity within a row or column of k-space. We also employ complex convolution to learn rich representations from the complex k-space data. In addition, we develop a feature-strengthened modularized unit to further boost the reconstruction performance. Experiments demonstrate that our approach can accurately reconstruct hyperpolarized 129Xe and 1H lung MRI from 6-fold undersampled k-space data and provide lung function measurements with minimal biases compared with fully sampled images. These results demonstrate the effectiveness of the proposed algorithmic components and indicate that the proposed approach could be used for accelerated pulmonary MRI in research and clinical lung disease patient care.

Authors

  • Zimeng Li
  • Sa Xiao
    Department of Ophthalmology, University of Washington, Seattle, Washington, USA.
  • Cheng Wang
    Department of Pathology, Dalhousie University, Halifax, NS, Canada.
  • Haidong Li
    State Key Laboratory of Fine Chemicals , Dalian University of Technology , 2 Linggong Road , Dalian 116024 , P. R. China . Email: fanjl@dlut.edu.cn.
  • Xiuchao Zhao
    Key Laboratory of Magnetic Resonance in Biological Systems, State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, National Center for Magnetic Resonance in Wuhan, Wuhan Institute of Physics and Mathematics, Innovation Academy for Precision Measurement Science and Technology, Chinese Academy of Sciences-Wuhan National Laboratory for Optoelectronics, Wuhan, 430071, People's Republic of China.
  • Caohui Duan
    State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, National Center for Magnetic Resonance in Wuhan, Wuhan Institute of Physics and Mathematics, Chinese Academy of Sciences - Wuhan National Laboratory for Optoelectronics, Wuhan, P. R. China.
  • Qian Zhou
    Department of Computer Science, City University of Hong Kong, Hong Kong, Hong Kong SAR, China.
  • Qiuchen Rao
  • Yuan Fang
    Department of Neurology, Dongyang People's Hospital, Affiliated to Wenzhou Medical University, Dongyang, China.
  • Junshuai Xie
    State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, National Center for Magnetic Resonance in Wuhan, Wuhan Institute of Physics and Mathematics, Chinese Academy of Sciences - Wuhan National Laboratory for Optoelectronics, Wuhan, P. R. China.
  • Lei Shi
  • Fumin Guo
    School of Mechatronics Engineering, Nanchang University, Nanchang 330031, China.
  • Chaohui Ye
  • Xin Zhou
    School of Mechatronic Engineering, China University of Mining & Technology, Xuzhou 221116, China.