CMRxRecon: A publicly available k-space dataset and benchmark to advance deep learning for cardiac MRI.

Journal: Scientific data
PMID:

Abstract

Cardiac magnetic resonance imaging (CMR) has emerged as a valuable diagnostic tool for cardiac diseases. However, a significant drawback of CMR is its slow imaging speed, resulting in low patient throughput and compromised clinical diagnostic quality. The limited temporal resolution also causes patient discomfort and introduces artifacts in the images, further diminishing their overall quality and diagnostic value. There has been growing interest in deep learning-based CMR imaging algorithms that can reconstruct high-quality images from highly under-sampled k-space data. However, the development of deep learning methods requires large training datasets, which have so far not been made publicly available for CMR. To address this gap, we released a dataset that includes multi-contrast, multi-view, multi-slice and multi-coil CMR imaging data from 300 subjects. Imaging studies include cardiac cine and mapping sequences. The 'CMRxRecon' dataset contains raw k-space data and auto-calibration lines. Our aim is to facilitate the advancement of state-of-the-art CMR image reconstruction by introducing standardized evaluation criteria and making the dataset freely accessible to the research community.

Authors

  • ChengYan Wang
  • Jun Lyu
    Clinical Research Center, The First Affiliated Hospital of Xi'an Jiaotong University, Xi'an, Shaanxi 710061, China.
  • Shuo Wang
    College of Tea & Food Science, Anhui Agricultural University, Hefei, China.
  • Chen Qin
  • Kunyuan Guo
    Department of Electronic Science, Fujian Provincial Key Laboratory of Plasma and Magnetic Resonance, National Institute for Data Science in Health and Medicine, Institute of Artificial Intelligence, Xiamen University, Xiamen, China.
  • Xinyu Zhang
    Wenzhou Medical University Renji College, Wenzhou, Zhejiang, China.
  • Xiaotong Yu
    School of Mathematical Sciences, University of Chinese Academy of Sciences, Beijing 100049, China; Research Center on Fictitious Economy and Data Science, Chinese Academy of Sciences, Beijing 100190, China; Key Laboratory of Big Data Mining and Knowledge Management, Chinese Academy of Sciences, Beijing 100190, China.
  • Yan Li
    Interdisciplinary Research Center for Biology and Chemistry, Liaoning Normal University, Dalian, China.
  • Fanwen Wang
    Institute of Science and Technology for Brain-Inspired Intelligence, Fudan University, Shanghai 200433, China.
  • Jianhua Jin
    School of Data Science, Fudan University, Shanghai, China.
  • Zhang Shi
    Department of Radiology, Changhai Hospital, Shanghai, China.
  • Ziqiang Xu
    School of Health Science and Engineering, University of Shanghai for Science and Technology, Shanghai, China.
  • Yapeng Tian
    Department of Computer Science, The University of Texas at Dallas, Richardson, USA.
  • Sha Hua
    School of Business, Hunan Agricultural University, Changsha 410128, China.
  • Zhensen Chen
    Center for Biomedical Imaging Research, Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing, China.
  • Meng Liu
  • Mengting Sun
    Department of Tumor Biobank, Jiangsu Cancer Hospital, Jiangsu Institute of Cancer Research, Nanjing 210009, China.
  • Xutong Kuang
    Human Phenome Institute, Fudan University, Shanghai, China.
  • Kang Wang
    Department of Orthopedics, Third Hospital of Changsha, Changsha 410015.
  • Haoran Wang
    Department of Urology, The Fifth Affiliated Hospital of Guangzhou Medical University, Guangzhou, 510700, China.
  • Hao Li
    Department of Urology, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China.
  • Yinghua Chu
    Simens Healthineers Ltd., Beijing, China.
  • Guang Yang
    National Heart and Lung Institute, Imperial College London, London, UK.
  • Wenjia Bai
    Department of Computing Imperial College London London UK.
  • Xiahai Zhuang
    School of Data Science, Fudan University, Shanghai, China; Fudan-Xinzailing Joint Research Center for Big Data, Fudan University, Shanghai, China. Electronic address: zxh@fudan.edu.cn.
  • He Wang
    Department of Neurosurgery, Xuanwu Hospital, Capital Medical University, China International Neuroscience Institute, Beijing, China.
  • Jing Qin
    School of Nursing, The Hong Kong Polytechnic University, Hong Kong, China.
  • Xiaobo Qu