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Genomic Structural Variation

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DeepC: predicting 3D genome folding using megabase-scale transfer learning.

Nature methods
Predicting the impact of noncoding genetic variation requires interpreting it in the context of three-dimensional genome architecture. We have developed deepC, a transfer-learning-based deep neural network that accurately predicts genome folding from...

SVFX: a machine learning framework to quantify the pathogenicity of structural variants.

Genome biology
There is a lack of approaches for identifying pathogenic genomic structural variants (SVs) although they play a crucial role in many diseases. We present a mechanism-agnostic machine learning-based workflow, called SVFX, to assign pathogenicity score...