AIMC Topic: Host Microbial Interactions

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Human host status inference from temporal microbiome changes via recurrent neural networks.

Briefings in bioinformatics Nov 5, 2021
With the rapid increase in sequencing data, human host status inference (e.g. healthy or sick) from microbiome data has become an important issue. Existing studies are mostly based on single-point microbiome composition, while it is rare that the hos...
Humans Neural Networks, Computer Data Analysis Algorithms Deep Learning Computational Biology RNA, Ribosomal, 16S Microbiota Metagenomics Host Microbial Interactions
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An account of in silico identification tools of secreted effector proteins in bacteria and future challenges.

Briefings in bioinformatics Jan 18, 2019
Bacterial pathogens secrete numerous effector proteins via six secretion systems, type I to type VI secretion systems, to adapt to new environments or to promote virulence by bacterium-host interactions. Many computational approaches have been used i...
Humans Neural Networks, Computer Machine Learning Algorithms Databases, Factual Computer Simulation Computational Biology Support Vector Machine Bayes Theorem Bacterial Proteins Models, Biological Virulence Markov Chains Bacterial Secretion Systems Host Microbial Interactions
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