Harnessing Artificial Intelligence in Multimodal Omics Data Integration: Paving the Path for the Next Frontier in Precision Medicine.

Journal: Annual review of biomedical data science
PMID:

Abstract

The integration of multiomics data with detailed phenotypic insights from electronic health records marks a paradigm shift in biomedical research, offering unparalleled holistic views into health and disease pathways. This review delineates the current landscape of multimodal omics data integration, emphasizing its transformative potential in generating a comprehensive understanding of complex biological systems. We explore robust methodologies for data integration, ranging from concatenation-based to transformation-based and network-based strategies, designed to harness the intricate nuances of diverse data types. Our discussion extends from incorporating large-scale population biobanks to dissecting high-dimensional omics layers at the single-cell level. The review underscores the emerging role of large language models in artificial intelligence, anticipating their influence as a near-future pivot in data integration approaches. Highlighting both achievements and hurdles, we advocate for a concerted effort toward sophisticated integration models, fortifying the foundation for groundbreaking discoveries in precision medicine.

Authors

  • Yonghyun Nam
    Department of Industrial Engineering, Ajou University, Wonchun-dong, Yeongtong-gu, Suwon, 443-749, South Korea.
  • Jaesik Kim
    Department of Computer Engineering, Ajou University, Suwon, South Korea.
  • Sang-Hyuk Jung
    Samsung Advanced Institute for Health Sciences & Technology (SAIHST), Sungkyunkwan University, Seoul, Republic of Korea.
  • Jakob Woerner
    Department of Biostatistics, Epidemiology and Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA; email: dokyoon.kim@pennmedicine.upenn.edu.
  • Erica H Suh
    Department of Biostatistics, Epidemiology and Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA; email: dokyoon.kim@pennmedicine.upenn.edu.
  • Dong-Gi Lee
    Department of Industrial Engineering, Ajou University, 206 Worldcup-ro, Yeongtong-gu, Suwon, 16499, South Korea.
  • Manu Shivakumar
    Department of Biostatistics, Epidemiology, and Informatics, Perelman School of Medicine, University of Pennsylvania, 19104, Philadelphia, PA, USA.
  • Matthew E Lee
    Department of Biostatistics, Epidemiology, and Informatics, Perelman School of Medicine, University of Pennsylvania, 19104, Philadelphia, PA, USA.
  • Dokyoon Kim
    Department of Biostatistics, Epidemiology & Informatics, University of Pennsylvania, Philadelphia, USA.