Length-scale study in deep learning prediction for non-small cell lung cancer brain metastasis.

Journal: Scientific reports
Published Date:

Abstract

Deep learning-assisted digital pathology has demonstrated the potential to profoundly impact clinical practice, even surpassing human pathologists in performance. However, as deep neural network (DNN) architectures grow in size and complexity, their explainability decreases, posing challenges in interpreting pathology features for broader clinical insights into physiological diseases. To better assess the interpretability of digital microscopic images and guide future microscopic system design, we developed a novel method to study the predictive feature length-scale that underpins a DNN's predictive power. We applied this method to analyze a DNN's capability in predicting brain metastasis from early-stage non-small-cell lung cancer biopsy slides. This study quantifies DNN's attention for brain metastasis prediction, targeting features at both the cellular scale and tissue scale in H&E-stained histological whole slide images. At the cellular scale, the predictive power of DNNs progressively increases with higher resolution and significantly decreases when the resolvable feature length exceeds 5 microns. Additionally, DNN uses more macro-scale features associated with tissue architecture and is optimized when assessing visual fields greater than 41 microns. Our study computes the length-scale requirements for optimal DNN learning on digital whole-slide microscopic images, holding the promise to guide future optical microscope designs in pathology applications and facilitating downstream deep learning analysis.

Authors

  • Haowen Zhou
    Department of Statistics, University of Illinois Urbana-Champaign, 725 South Wright Street, Champaign, IL, USA.
  • Siyu Lin
    Imaging and Artificial Vision Laboratory, EA 7535, University of Burgundy, Dijon 21000, France.
  • Mark Watson
    Caprion Biosciences, Montreal, QC, Canada.
  • Cory T Bernadt
    Department of Pathology and Immunology, Washington University School of Medicine, St. Louis, MO, 63110, USA.
  • Oumeng Zhang
    Department of Electrical Engineering, California Institute of Technology, Pasadena, CA, 91125, USA.
  • Ling Liao
    Department of Pathology and Immunology, Washington University School of Medicine, St. Louis, MO, 63110, USA.
  • Ramaswamy Govindan
    Siteman Cancer Center, Washington University School of Medicine, St. Louis, MO, USA.
  • Richard J Cote
    University of Miami, Miami, Florida. Electronic address: RCote@med.miami.edu.
  • Changhuei Yang
    Department of Electrical Engineering, California Institute of Technology, Pasadena, CA, USA. chyang@caltech.edu.