Predicting standardized uptake value of brown adipose tissue from CT scans using convolutional neural networks.

Journal: Nature communications
PMID:

Abstract

The standard method for identifying active Brown Adipose Tissue (BAT) is [F]-Fluorodeoxyglucose ([F]-FDG) PET/CT imaging, which is costly and exposes patients to radiation, making it impractical for population studies. These issues can be addressed with computational methods that predict [F]-FDG uptake by BAT from CT; earlier population studies pave the way for developing such methods by showing some correlation between the Hounsfield Unit (HU) of BAT in CT and the corresponding [F]-FDG uptake in PET. In this study, we propose training convolutional neural networks (CNNs) to predict [F]-FDG uptake by BAT from unenhanced CT scans in the restricted regions that are likely to contain BAT. Using the Attention U-Net architecture, we perform experiments on datasets from four different cohorts, the largest study to date. We segment BAT regions using predicted [F]-FDG uptake values, achieving 23% to 40% better accuracy than conventional CT thresholding. Additionally, BAT volumes computed from the segmentations distinguish the subjects with and without active BAT with an AUC of 0.8, compared to 0.6 for CT thresholding. These findings suggest CNNs can facilitate large-scale imaging studies more efficiently and cost-effectively using only CT.

Authors

  • Ertunc Erdil
    Biomedical Image Computing Group, ETH Zurich, Zurich 8092, Switzerland.
  • Anton S Becker
    From the Institute of Diagnostic and Interventional Radiology, University Hospital Zurich, Zurich, Switzerland.
  • Moritz Schwyzer
    Department of Nuclear Medicine, University Hospital Zurich, University of Zurich, Switzerland; Institute of Diagnostic and Interventional Radiology, University Hospital Zurich, University of Zurich, Switzerland.
  • Borja Martinez-Tellez
    Department of Nursing, Physiotherapy and Medicine and SPORT Research Group (CTS-1024), CERNEP Research Center, University of Almería, Almería, Spain.
  • Jonatan R Ruiz
    Department of Physical Education and Sports, Faculty of Sports Science, Sport and Health University Research Institute (iMUDS), University of Granada, 18071, Granada, Spain.
  • Thomas Sartoretti
    Department of Nuclear Medicine, University Hospital Zurich / University of Zurich, Ramistrasse 100, 8091, Zurich, Switzerland.
  • H Alberto Vargas
    Department of Radiology, Body Imaging Service, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
  • A Irene Burger
    Department of Nuclear Medicine, University Zurich Hospital, Zurich, Switzerland.
  • Alin Chirindel
    Department of Radiology and Nuclear Medicine, University Hospital of Basel, Basel, Switzerland.
  • Damian Wild
    Department of Radiology and Nuclear Medicine, University Hospital of Basel, Basel, Switzerland.
  • Nicola Zamboni
    Swiss Multi-Omics Center, ETH Zürich, Zürich, Switzerland.
  • Bart Deplancke
    Laboratory of Systems Biology and Genetics, Institute of Bioengineering, School of Life Sciences, Ecole Polytechnique Fédérale de Lausanne (EPFL), 1015, Lausanne, Switzerland.
  • Vincent Gardeux
    Laboratory of Systems Biology and Genetics, Institute of Bioengineering, School of Life Sciences, Ecole Polytechnique Fédérale de Lausanne (EPFL), 1015, Lausanne, Switzerland.
  • Claudia Irene Maushart
    Department of Endocrinology, Diabetes and Metabolism, University Hospital Basel and University of Basel, Basel, Switzerland.
  • Matthias Johannes Betz
    Department of Endocrinology, Diabetes and Metabolism, University Hospital Basel and University of Basel, Basel, Switzerland.
  • Christian Wolfrum
    Department of Health Sciences and Technology, ETH Zurich, Zurich, Switzerland.
  • Ender Konukoglu