Mapping Thrombosis Serum Markers by H-NMR Allied with Machine Learning Tools.

Journal: Molecules (Basel, Switzerland)
PMID:

Abstract

Machine learning and artificial intelligence tools were used to investigate the discriminatory potential of blood serum metabolites for thromboembolism and antiphospholipid syndrome (APS). H-NMR-based metabonomics data of the serum samples of patients with arterial or venous thromboembolism (VTE) without APS (n = 32), thrombotic primary APS patients (APS, n = 32), and healthy controls (HCs) (n = 32) were investigated. Unique metabolic profiles between VTE and HCs, APS and HCs, and between VTE and triple-positive APS groups were indicative of the significant alterations in the metabolic pathways of glycolysis, the TCA cycle, lipid metabolism, and branched-chain amino acid (BCAA) metabolism, and pointed to the complex pathogenesis mechanisms of APS and VTE. Histidine, 3-hydroxybutyrate, and threonine were shown to be the top three metabolites with the most substantial impact on model predictions, suggesting that these metabolites play a pivotal role in distinguishing among APS, VTE, and HCs. These metabolites might be potential biomarkers to differentiate APS and VTE patients.

Authors

  • Lucas G Martins
    Laboratory of Biological Chemistry, Department of Organic Chemistry, Institute of Chemistry, Universidade Estadual de Campinas, Campinas 13083-862, SP, Brazil.
  • Bruna M Manzini
    Laboratory of Hemostasis, Hemocentro-Unicamp, Universidade Estadual de Campinas, Campinas 13083-878, SP, Brazil.
  • Silmara Montalvão
    Laboratory of Hemostasis, Hemocentro-Unicamp, Universidade Estadual de Campinas, Campinas 13083-878, SP, Brazil.
  • Millene A Honorato
    Laboratory of Hemostasis, Hemocentro-Unicamp, Universidade Estadual de Campinas, Campinas 13083-878, SP, Brazil.
  • Marina P Colella
    Laboratory of Hemostasis, Hemocentro-Unicamp, Universidade Estadual de Campinas, Campinas 13083-878, SP, Brazil.
  • Gabriela G Y Hayakawa
    Laboratory of Hemostasis, Hemocentro-Unicamp, Universidade Estadual de Campinas, Campinas 13083-878, SP, Brazil.
  • Erich V de Paula
    Laboratory of Hemostasis, Hemocentro-Unicamp, Universidade Estadual de Campinas, Campinas 13083-878, SP, Brazil.
  • Fernanda A Orsi
    Laboratory of Hemostasis, Hemocentro-Unicamp, Universidade Estadual de Campinas, Campinas 13083-878, SP, Brazil.
  • Erik S Braga
    Laboratory of Biological Chemistry, Department of Organic Chemistry, Institute of Chemistry, Universidade Estadual de Campinas, Campinas 13083-862, SP, Brazil.
  • Nataša Avramović
    University of Belgrade, Faculty of Medicine, Institute of Medical Chemistry, 11000 Belgrade, Serbia.
  • Folurunsho Bright Omage
    Laboratory of Biological Chemistry, Department of Organic Chemistry, Institute of Chemistry, Universidade Estadual de Campinas, Campinas 13083-862, SP, Brazil.
  • Ljubica Tasic
    Laboratory of Biological Chemistry, Department of Organic Chemistry, Institute of Chemistry, Universidade Estadual de Campinas, Campinas 13083-862, SP, Brazil.
  • Joyce M Annichino-Bizzacchi
    Laboratory of Hemostasis, Hemocentro-Unicamp, Universidade Estadual de Campinas, Campinas 13083-878, SP, Brazil.