Automated detection of motion artifacts in brain MR images using deep learning.

Journal: NMR in biomedicine
PMID:

Abstract

Quality assessment, including inspecting the images for artifacts, is a critical step during magnetic resonance imaging (MRI) data acquisition to ensure data quality and downstream analysis or interpretation success. This study demonstrates a deep learning (DL) model to detect rigid motion in T-weighted brain images. We leveraged a 2D convolutional neural network (CNN) trained on motion-synthesized data for three-class classification and tested it on publicly available retrospective and prospective datasets. Grad-CAM heatmaps enabled the identification of failure modes and provided an interpretation of the model's results. The model achieved average precision and recall metrics of 85% and 80% on six motion-simulated retrospective datasets. Additionally, the model's classifications on the prospective dataset showed 93% agreement with the labeling of a radiologist a strong inverse correlation (-0.84) compared to average edge strength, an image quality metric indicative of motion. This model is aimed at inline automatic detection of motion artifacts, accelerating part of the time-consuming quality assessment (QA) process and augmenting expertise on-site, particularly relevant in low-resource settings where local MR knowledge is scarce.

Authors

  • Marina Manso Jimeno
    Department of Biomedical Engineering, Columbia University in the City of New York, New York, NY 10027, USA; Columbia University Magnetic Resonance Research Center, Columbia University in the City of New York, New York, NY 10027, USA.
  • Keerthi Sravan Ravi
    Department of Biomedical Engineering, Columbia University in the City of New York, New York, NY 10027, USA; Columbia University Magnetic Resonance Research Center, Columbia University in the City of New York, New York, NY 10027, USA.
  • Maggie Fung
    GE Healthcare, Waukesha, Wisconsin, USA.
  • Dotun Oyekunle
    Department of Radiology, University College Hospital, Ibadan 200285, Nigeria.
  • Godwin Ogbole
    Department of Radiology, University College Hospital, Ibadan 200285, Nigeria.
  • John Thomas Vaughan
    Department of Biomedical Engineering, Columbia University in the City of New York, New York, New York, USA.
  • Sairam Geethanath
    Columbia University Magnetic Resonance Research Center, Columbia University in the City of New York, New York, NY 10027, USA. Electronic address: sg3606@columbia.edu.