Fast identification of influenza using label-free SERS combined with machine learning algorithms clinical nasal swab samples.

Journal: Analytical methods : advancing methods and applications
Published Date:

Abstract

Influenza virus outbreaks, which have become more frequent in recent years, have attracted global attention. Reverse transcription-polymerase chain reaction (RT-PCR) and enzyme-linked immunosorbent assay (ELISA), as the "gold standard" methods for virus detection, are not suitable for rapid diagnosis of the virus because of their long reaction time and sample preparation time. Therefore, a new method for influenza virus detection that is rapid, accurate and portable is needed. In this work, a label-free technology based on surface enhanced Raman spectroscopy was developed to directly analyse nasal swab samples in order to explore the molecular differences between influenza patients and normal people. Following that, machine learning algorithms based on Principal Component Analysis combined with Linear Discriminant Analysis (PCA-LDA) and Support Vector Machines (SVM) were used to extract and model the molecular features of nasal fluid to differentiate between influenza patients and normal people with an accuracy of 76.5%. With only 10 μL of sample and 5 seconds of testing time per sample, this label-free SERS combined with machine learning would provide a rapid and portable testing platform for influenza virus detection.

Authors

  • Shaohua He
    Key Laboratory of Optoelectronic Science and Technology for Medicine, Ministry of Education, Fujian Provincial Key Laboratory for Photonics Technology, Fujian Normal University, Fuzhou, 350117, China. duo@fjnu.edu.cn.
  • Shibo Cao
    Department of Clinical Laboratory, Shanghai East Hospital, Tongji University School of Medicine, Shanghai 200120, China. zongming@tongji.edu.cn.
  • Jiayi Yuan
    Department of Pharmaceutical Sciences, School of Pharmacy, University of Pittsburgh, Pittsburgh, PA, 15261, USA.
  • Zhaoda Yu
    Department of Clinical Laboratory, Shanghai East Hospital, Tongji University School of Medicine, Shanghai 200120, China. zongming@tongji.edu.cn.
  • Yi Liu
    Department of Interventional Therapy, Ningbo No. 2 Hospital, Ningbo, China.
  • Yangmin Wu
    Key Laboratory of OptoElectronic Science and Technology for Medicine, Ministry of Education, Fujian Provincial Key Laboratory for Photonics Technology, Fujian Normal University, Fuzhou, 350117, China.
  • Shuohong Weng
    Key Laboratory of Optoelectronic Science and Technology for Medicine, Ministry of Education, Fujian Provincial Key Laboratory for Photonics Technology, Fujian Normal University, Fuzhou, 350117, China. duo@fjnu.edu.cn.
  • Ming Zong
    School of Computer Science, Peking University, Beijing, China.
  • Duo Lin
    Key Laboratory of OptoElectronic Science and Technology for Medicine, Ministry of Education, Fujian Provincial Key Laboratory for Photonics Technology, Fujian Normal University, Fuzhou 350117, PR China. Electronic address: duo@fjnu.edu.cn.