High-throughput screening system for immunogenic cell death inducers using artificial intelligence-based real-time image analysis.

Journal: Computers in biology and medicine
Published Date:

Abstract

Immunogenic cell death (ICD) can enhance the immunogenicity of cold tumors, convert them into immune-responsive hot tumors, and improve the efficacy of cancer immunotherapy. Because ICD inducers cause cell swelling, membrane rupture, and the release of damage-associated molecular patterns (DAMPs), effective screening of ICD inducers requires a system capable of rapidly and accurately assessing morphological changes and DAMP dynamics on a large scale, thus highlighting the need for advanced image-processing capabilities. In the present study, we developed an artificial intelligence (AI)-based detector to screen for ICD inducers by identifying the typical morphologies of dying cells undergoing ICD. To enhance the performance, we applied transfer learning from fluorescent markers and fine-tuned the model using differential interference contrast (DIC) images. In addition, model-assisted labeling (MAL) improved annotation efficiency by reducing the need for manual labeling in ICD screening. In a blind test, the AI successfully identified three ICD-inducing agents from eight candidates, which were validated through analyses of cell death type, DAMP release, and immune activation. Our AI-based high-throughput screening (HTS) system efficiently identified ICD candidates using only real-time optical images, thereby significantly reducing the time and resources required for screening. In addition, the system demonstrated the ability to detect subtle morphological differences that are difficult to discern through manual analysis, indicating its potential for ICD prediction as well as for foundational research and broader screening applications.

Authors

  • Eunseo Kim
    Department of Biomedical Science, Program in Biomedical Science and Engineering, Graduate school, Inha University, Incheon, 22212, Republic of Korea.
  • Donghoon Jang
    Department of Electrical and Computer Engineering, Inha University, Incheon, 22212, Republic of Korea.
  • Minji Kim
    Department of Electrical and Computer Engineering, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA.
  • Jiwon Heo
    Department of Computer Science, Inha University, Incheon, 22212, Republic of Korea.
  • Jisoo Shin
    Department of Biomedical Science, Program in Biomedical Science and Engineering, Graduate school, Inha University, Incheon, 22212, Republic of Korea.
  • Joo-Yoon Chung
    Department of Biomedical Science, Program in Biomedical Science and Engineering, Graduate school, Inha University, Incheon, 22212, Republic of Korea.
  • Minji Choi
    Division of Electrical Engineering, Hanyang University, Ansan 15588, Korea.
  • Wen-Hao Yang
    Graduate Institute of Biomedical Sciences, China Medical University, Taichung, 40402, Taiwan.
  • Hyungyu Lee
    DoAI Inc., Seoul, Korea.
  • Jong-Ho Cha
    Department of Biomedical Science, Program in Biomedical Science and Engineering, Graduate school, Inha University, Incheon, 22212, Republic of Korea; Department of Biomedical Science, College of Medicine, Inha University, Incheon 22212, Republic of Korea; Biohybrid Systems Research Center, Inha University, Incheon, 22212, Republic of Korea. Electronic address: chajongho@inha.ac.kr.