Knowledge Author: facilitating user-driven, domain content development to support clinical information extraction.

Journal: Journal of biomedical semantics
Published Date:

Abstract

BACKGROUND: Clinical Natural Language Processing (NLP) systems require a semantic schema comprised of domain-specific concepts, their lexical variants, and associated modifiers to accurately extract information from clinical texts. An NLP system leverages this schema to structure concepts and extract meaning from the free texts. In the clinical domain, creating a semantic schema typically requires input from both a domain expert, such as a clinician, and an NLP expert who will represent clinical concepts created from the clinician's domain expertise into a computable format usable by an NLP system. The goal of this work is to develop a web-based tool, Knowledge Author, that bridges the gap between the clinical domain expert and the NLP system development by facilitating the development of domain content represented in a semantic schema for extracting information from clinical free-text.

Authors

  • William Scuba
    Department of Biomedical Informatics, University of Utah, 421 Wakara Way, Salt Lake City, 84108 UT United States.
  • Melissa Tharp
    Department of Biomedical Informatics, University of Utah, Salt Lake City, UT, 84108, USA.
  • Danielle Mowery
    Department of Biomedical Informatics, University of Utah, 421 Wakara Way, Salt Lake City, 84108 UT United States.
  • Eugene Tseytlin
    Department of Biomedical Informatics, School of Medicine, University of Pittsburgh, USA.
  • Yang Liu
    Department of Computer Science, Hong Kong Baptist University, Hong Kong, China.
  • Frank A Drews
    Department of Psychology, University of Utah, Salt Lake City, UT, 84108, USA.
  • Wendy W Chapman
    School of Medicine, University of Utah, Salt Lake City, Utah, US.