AIMC Topic: Biological Ontologies

Clear Filters Showing 1 to 10 of 637 articles

Jackalope Plus tool for post-coordination, ontology development, and precise mapping in observational health studies.

Scientific reports Jul 2, 2025
Accurate mapping of complex health data to the OMOP CDM while preserving clinical nuance remains a challenge. We introduce Jackalope Plus, a novel tool leveraging SNOMED CT post-coordination and a GPT-4o mini LLM, to significantly enhance the precisi...
Humans Systematized Nomenclature of Medicine Biological Ontologies Observational Studies as Topic Software
View on PubMed DOI

Enhancing the Accuracy of Human Phenotype Ontology Identification: Comparative Evaluation of Multimodal Large Language Models.

Journal of medical Internet research Jun 2, 2025
BACKGROUND: Identifying Human Phenotype Ontology (HPO) terms is crucial for diagnosing and managing rare diseases. However, clinicians, especially junior physicians, often face challenges due to the complexity of describing patient phenotypes accurat...
Large Language Models Biological Ontologies Humans Phenotype Language
View on PubMed DOI

Development and evaluation of the COntextualised and Personalised Physical activity and Exercise Recommendations (COPPER) Ontology.

The international journal of behavioral nutrition and physical activity May 5, 2025
BACKGROUND: Personalised recommendations for action and coping plans for physical activity (PA) may reduce user burden and increase plan quality. Ontologies are a promising alternative to existing black-box approaches for creating such personalised r...
Biological Ontologies Exercise Humans Health Promotion
View on PubMed DOI

Knowledge Representation and Management: 2023 Highlights and the Rise of Knowledge Graph Embeddings.

Yearbook of medical informatics Apr 8, 2025
OBJECTIVES: We aim to identify, select, and summarize the best papers published in 2023 for the Knowledge Representation and Management (KRM) section of the International Medical Informatics Association (IMIA) Yearbook.
Biological Ontologies Machine Learning Health Information Interoperability Humans Medical Informatics
View on PubMed DOI

MIO: An ontology for annotating and integrating medical knowledge in myocardial infarction to enhance clinical decision making.

Computers in biology and medicine Apr 1, 2025
As biotechnology and computer science continue to advance, there's a growing amount of biomedical data worldwide. However, standardizing and consolidating these data remains challenging, making analysis and comprehension more difficult. To enhance re...
Humans Myocardial Infarction Biological Ontologies Clinical Decision-Making Precision Medicine
View on PubMed DOI

Digital evolution: Novo Nordisk's shift to ontology-based data management.

Journal of biomedical semantics Mar 22, 2025
The amount of biomedical data is growing, and managing it is increasingly challenging. While Findable, Accessible, Interoperable and Reusable (FAIR) data principles provide guidance, their adoption has proven difficult, especially in larger enterpris...
Biological Ontologies Semantics Artificial Intelligence Data Management Drug Discovery
View on PubMed DOI

Ontology-driven identification of inconsistencies in clinical data: A case study in lung cancer phenotyping.

Journal of biomedical informatics Mar 21, 2025
OBJECTIVE: To illustrate the use of an ontology in evaluating data quality in the medical field, focusing on phenotyping lung cancers.
Data Warehousing Anaplastic Lymphoma Kinase Protein Kinase Inhibitors Data Accuracy Phenotype Mutation Humans ErbB Receptors Biological Ontologies Lung Neoplasms
View on PubMed DOI

GNOme, an ontology for glycan naming and subsumption.

Analytical and bioanalytical chemistry Feb 8, 2025
While GlyTouCan provides stable identifiers for referencing glycan structures, they are not organized semantically. GNOme, a glycan naming and subsumption ontology and a member of the OBOFoundry, organizes GlyTouCan accessions for automated reasoning...
Software Terminology as Topic Polysaccharides Glycomics Biological Ontologies
View on PubMed DOI

An ontology-based rare disease common data model harmonising international registries, FHIR, and Phenopackets.

Scientific data Feb 8, 2025
Although rare diseases (RDs) affect over 260 million individuals worldwide, low data quality and scarcity challenge effective care and research. This work aims to harmonise the Common Data Set by European Rare Disease Registry Infrastructure, Health ...
Registries Biological Ontologies Europe Health Level Seven Rare Diseases Humans
View on PubMed DOI

An Ontology for Digital Medicine Outcomes: Development of the Digital Medicine Outcomes Value Set (DOVeS).

JMIR medical informatics Feb 6, 2025
BACKGROUND: Over the last 10-15 years, US health care and the practice of medicine itself have been transformed by a proliferation of digital medicine and digital therapeutic products (collectively, digital health tools [DHTs]). While a number of DHT...
Telemedicine Humans Biological Ontologies Outcome Assessment, Health Care
View on PubMed DOI
Popular Topics
Recent Journals