A Gene Ontology Tutorial in Python.

Journal: Methods in molecular biology (Clifton, N.J.)
Published Date: Jan 1, 2017

Abstract

This chapter is a tutorial on using Gene Ontology resources in the Python programming language. This entails querying the Gene Ontology graph, retrieving Gene Ontology annotations, performing gene enrichment analyses, and computing basic semantic similarity between GO terms. An interactive version of the tutorial, including solutions, is available at http://gohandbook.org .

Authors

  • Alex Warwick Vesztrocy
    Department of Genetics, Evolution and Environment, University College London, Gower St, London, WC1E 6BT, UK.
  • Christophe Dessimoz
    Department of Genetics, Evolution and Environment, University College London, Gower St, London, WC1E 6BT, UK. Christophe.Dessimoz@unil.ch.

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