Deep learning model enables the discovery of a novel immunotherapeutic agent regulating the kynurenine pathway.

Journal: Oncoimmunology
PMID:

Abstract

Kynurenine (Kyn) is a key inducer of an immunosuppressive tumor microenvironment (TME). Although indoleamine 2,3-dioxygenase (IDO)-selective inhibitors have been developed to suppress the Kyn pathway, the results were not satisfactory due to the presence of various opposing mechanisms. Here, we employed an orally administered novel Kyn pathway regulator to overcome the limitation of anti-tumor immune response. We identified a novel core structure that inhibited both IDO and TDO. An orally available lead compound, STB-C017 (designated hereafter as STB), effectively inhibited the enzymatic and cellular activity of IDO and TDO . Moreover, it potently suppressed Kyn levels in both the plasma and tumor . STB monotherapy increased the infiltration of CD8 T cells into TME. In addition, STB reprogrammed the TME with widespread changes in immune-mediated gene signatures. Notably, STB-based combination immunotherapy elicited the most potent anti-tumor efficacy through concurrent treatment with immune checkpoint inhibitors, leading to complete tumor regression and long-term overall survival. Our study demonstrated that a novel Kyn pathway regulator derived using deep learning technology can activate T cell immunity and potentiate immune checkpoint blockade by overcoming an immunosuppressive TME.

Authors

  • Jeong Hun Kim
    Dept. of Electrical and Computer Engineering, Johns Hopkins University, Baltimore MD.
  • Won Suk Lee
    Laboratory of Translational Immuno-Oncology, Seongnam, Korea.
  • Hye Jin Lee
    Laboratory of Translational Immuno-Oncology, Seongnam, Korea.
  • Hannah Yang
    Laboratory of Translational Immuno-Oncology, Seongnam, Korea.
  • Seung Joon Lee
    Laboratory of Translational Immuno-Oncology, Seongnam, Korea.
  • So Jung Kong
    Laboratory of Translational Immuno-Oncology, Seongnam, Korea.
  • Soyeon Je
    Medical Science Study Centre, Syntekabio Inc, Seoul, South Korea.
  • Hyun-Jin Yang
    Gwanghwamun Medical Study Centre, Syntekabio Inc., 92 Saemunan-ro, #1708, Jongno-gu, Seoul, 03186, South Korea.
  • Jongsun Jung
    Genome Data Integration Centre, Syntekabio Inc., 187 Techno 2-ro, B512, Yuseong-gu, Daejeon, 34025, South Korea. jung@syntekabio.com.
  • Jaekyung Cheon
    Laboratory of Translational Immuno-Oncology, Seongnam, Korea.
  • Beodeul Kang
    Laboratory of Translational Immuno-Oncology, Seongnam, Korea.
  • Hong Jae Chon
    Laboratory of Translational Immuno-Oncology, Seongnam, Korea.
  • Chan Kim
    Laboratory of Translational Immuno-Oncology, Seongnam, Korea.