Classification of paediatric brain tumours by diffusion weighted imaging and machine learning.

Journal: Scientific reports
Published Date:

Abstract

To determine if apparent diffusion coefficients (ADC) can discriminate between posterior fossa brain tumours on a multicentre basis. A total of 124 paediatric patients with posterior fossa tumours (including 55 Medulloblastomas, 36 Pilocytic Astrocytomas and 26 Ependymomas) were scanned using diffusion weighted imaging across 12 different hospitals using a total of 18 different scanners. Apparent diffusion coefficient maps were produced and histogram data was extracted from tumour regions of interest. Total histograms and histogram metrics (mean, variance, skew, kurtosis and 10th, 20th and 50th quantiles) were used as data input for classifiers with accuracy determined by tenfold cross validation. Mean ADC values from the tumour regions of interest differed between tumour types, (ANOVA P < 0.001). A cut off value for mean ADC between Ependymomas and Medulloblastomas was found to be of 0.984 × 10 mm s with sensitivity 80.8% and specificity 80.0%. Overall classification for the ADC histogram metrics were 85% using Naïve Bayes and 84% for Random Forest classifiers. The most commonly occurring posterior fossa paediatric brain tumours can be classified using Apparent Diffusion Coefficient histogram values to a high accuracy on a multicentre basis.

Authors

  • Jan Novak
    Oncology, Birmingham Women's and Children's NHS foundation trust, Birmingham, United Kingdom; Department of Psychology, School of Life and Health sciences, Aston University, Birmingham, United Kingdom.
  • Niloufar Zarinabad
    Institute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, United Kingdom.
  • Heather Rose
    Institute of Cancer and Genomic Sciences, School of Medical and Dental Sciences, University of Birmingham, Birmingham, UK.
  • Theodoros Arvanitis
    Institute of Cancer and Genomic Sciences, School of Medical and Dental Sciences, University of Birmingham, Birmingham, UK.
  • Lesley MacPherson
    Radiology, Birmingham Women's and Children's NHS foundation trust, Birmingham, United Kingdom.
  • Benjamin Pinkey
    Radiology, Birmingham Women's and Children's NHS Foundation Trust, Birmingham, UK.
  • Adam Oates
    Radiology, Birmingham Women's and Children's NHS foundation trust, Birmingham, United Kingdom.
  • Patrick Hales
    Developmental Imaging & Biophysics Section, UCL Great Ormond Street Institute of Child Health, London, WC1N 1EH, UK.
  • Richard Grundy
    The Children's Brain Tumour Research Centre, University of Nottingham, Nottingham, United Kingdom.
  • Dorothee Auer
    NIHR Nottingham Biomedical Research Centre, Queen's Medical Centre, Nottingham, United Kingdom.
  • Daniel Rodriguez Gutierrez
    The Children's Brain Tumour Research Centre, University of Nottingham, Nottingham, UK.
  • Tim Jaspan
    The Children's Brain Tumour Research Centre, University of Nottingham, Nottingham, UK.
  • Shivaram Avula
    Department of Radiology, Alder Hey Foundation Trust Hospital, Liverpool, United Kingdom.
  • Laurence Abernethy
    Radiology, Alder Hey Children's NHS foundation trust, Liverpool, United Kingdom.
  • Ramneek Kaur
    Developmental Imaging & Biophysics Section, UCL Great Ormond Street Institute of Child Health, London, WC1N 1EH, UK.
  • Darren Hargrave
    Haematology and Oncology Department, Great Ormond Street Children's Hospital, London, UK.
  • Dipayan Mitra
    Neuroradiology, Royal Victoria Infirmary, Newcastle Upon Tyne, United Kingdom.
  • Simon Bailey
    Sir James Spence Institute of Child Health, Royal Victoria Infirmary, Newcastle upon Tyne, United Kingdom.
  • Nigel Davies
    Institute of Cancer and Genomic Sciences, School of Medical and Dental Sciences, University of Birmingham, Birmingham, UK.
  • Christopher Clark
    Developmental Imaging & Biophysics Section, UCL Great Ormond Street Institute of Child Health, London, WC1N 1EH, UK.
  • Andrew Peet
    Institute of Cancer and Genomic Sciences, School of Medical and Dental Sciences, University of Birmingham, Birmingham, UK. a.peet@bham.ac.uk.