A deep learning-based precision volume calculation approach for kidney and tumor segmentation on computed tomography images.

Journal: Computer methods and programs in biomedicine
Published Date:

Abstract

Previously, doctors interpreted computed tomography (CT) images based on their experience in diagnosing kidney diseases. However, with the rapid increase in CT images, such interpretations were required considerable time and effort, producing inconsistent results. Several novel neural network models were proposed to automatically identify kidney or tumor areas in CT images for solving this problem. In most of these models, only the neural network structure was modified to improve accuracy. However, data pre-processing was also a crucial step in improving the results. This study systematically discussed the necessary pre-processing methods before processing medical images in a neural network model. The experimental results were shown that the proposed pre-processing methods or models significantly improve the accuracy rate compared with the case without data pre-processing. Specifically, the dice score was improved from 0.9436 to 0.9648 for kidney segmentation and 0.7294 for all types of tumor detections. The performance was suitable for clinical applications with lower computational resources based on the proposed medical image processing methods and deep learning models. The cost efficiency and effectiveness were also achieved for automatic kidney volume calculation and tumor detection accurately.

Authors

  • Chiu-Han Hsiao
    Research Center for Information Technology Innovation, Academia Sinica, Taipei City, Taiwan, ROC.
  • Tzu-Lung Sun
    Department of Information Management, National Taiwan University, Taipei City, Taiwan, ROC.
  • Ping-Cherng Lin
    Research Center for Information Technology Innovation, Academia Sinica, Taipei City, Taiwan, ROC.
  • Tsung-Yu Peng
    Department of Information Management, National Taiwan University, Taipei City, Taiwan, ROC.
  • Yu-Hsin Chen
    Department of Information Management, National Taiwan University, Taipei City, Taiwan, ROC.
  • Chieh-Yun Cheng
    Department of Information Management, National Taiwan University, Taipei City, Taiwan, ROC.
  • Feng-Jung Yang
    Department of Internal Medicine, National Taiwan University Hospital Yunlin Branch, Douliu City, Yunlin County; School of Medicine, College of Medicine, National Taiwan University, Taipei, Taiwan, ROC. Electronic address: fongrong@ntu.edu.tw.
  • Shao-Yu Yang
    Department of Internal Medicine, National Taiwan University Hospital, Taipei City, Taiwan, ROC.
  • Chih-Horng Wu
    Department of Medical Imaging, National Taiwan University Hospital, Taipei, Taiwan.
  • Frank Yeong-Sung Lin
    Department of Information Management, National Taiwan University, Taipei City, Taiwan, ROC.
  • Yennun Huang
    Research Center for Information Technology Innovation, Academia Sinica, Taipei 10607, Taiwan.