POLCOVID: a multicenter multiclass chest X-ray database (Poland, 2020-2021).

Journal: Scientific data
PMID:

Abstract

The outbreak of the SARS-CoV-2 pandemic has put healthcare systems worldwide to their limits, resulting in increased waiting time for diagnosis and required medical assistance. With chest radiographs (CXR) being one of the most common COVID-19 diagnosis methods, many artificial intelligence tools for image-based COVID-19 detection have been developed, often trained on a small number of images from COVID-19-positive patients. Thus, the need for high-quality and well-annotated CXR image databases increased. This paper introduces POLCOVID dataset, containing chest X-ray (CXR) images of patients with COVID-19 or other-type pneumonia, and healthy individuals gathered from 15 Polish hospitals. The original radiographs are accompanied by the preprocessed images limited to the lung area and the corresponding lung masks obtained with the segmentation model. Moreover, the manually created lung masks are provided for a part of POLCOVID dataset and the other four publicly available CXR image collections. POLCOVID dataset can help in pneumonia or COVID-19 diagnosis, while the set of matched images and lung masks may serve for the development of lung segmentation solutions.

Authors

  • Aleksandra Suwalska
    Laboratory of Neuropsychobiology, Department of Psychiatry, University of Medical Sciences, Poznan, Poland.
  • Joanna Tobiasz
    Department of Data Science and Engineering, Silesian University of Technology, Gliwice, Poland; Department of Computer Graphics, Vision and Digital Systems, Silesian University of Technology, Gliwice, Poland.
  • Wojciech Prazuch
    Department of Data Science and Engineering, Silesian University of Technology, 44-100 Gliwice, Poland.
  • Marek Socha
    Department of Data Science and Engineering, Silesian University of Technology, Gliwice, Poland.
  • Paweł Foszner
    Department of Computer Graphics, Vision and Digital Systems, Faculty of Automatic Control, Electronics and Computer Science, Silesian University of Technology, Akademicka 2A, 44-100 Gliwice, Poland.
  • Damian Piotrowski
    Department of Infectious Diseases and Hepatology, Medical University of Silesia, Katowice, Poland.
  • Katarzyna Gruszczynska
    Department of Radiology and Nuclear Medicine, Medical University of Silesia, Katowice, Poland.
  • Magdalena Sliwinska
    Department of Diagnostic Imaging, Voivodship Specialist Hospital, Wroclaw, Poland.
  • Jerzy Walecki
    Department of Radiology, Centre of Postgraduate Medical Education, Central Clinical Hospital of the Ministry of Interior in Warsaw, Poland.
  • Tadeusz Popiela
    Chair of Radiology, Jagiellonian University Medical College, 31-501 Kraków, Poland.
  • Grzegorz Przybylski
    Department of Lung Diseases, Cancer and Tuberculosis, Kujawsko-Pomorskie Pulmonology Center, Bydgoszcz, Poland.
  • Mateusz Nowak
    Department of Radiology, Silesian Hospital, Cieszyn, Poland.
  • Piotr Fiedor
    Department of General and Transplantation Surgery, Medical University of Warsaw, Warsaw, Poland.
  • Małgorzata Pawłowska
    Katedra i Klinika Chorób Zakaźnych i Hepatologii, Collegium Medicum Uniwersytetu Mikołaja Kopernika w Toruniu. kikchzak@cm.umk.pl
  • Robert Flisiak
    c Department of Infectious Diseases and Hepatology , Medical University of Bialystok , Bialystok , Poland.
  • Krzysztof Simon
    Department of Infectious Diseases and Hepatology, Wroclaw Medical University, Wroclaw, Poland.
  • Gabriela Zapolska
    Department of Radiology, Czerniakowski Hospital, Warsaw, Poland.
  • Barbara Gizycka
    Department of Imaging Diagnostics, MEGREZ Hospital, Tychy, Poland.
  • Edyta Szurowska
    2nd Department of Radiology, Medical University of Gdansk, 80-210 Gdansk, Poland.
  • Michal Marczyk
    Department of Data Science and Engineering, Silesian University of Technology, 44-100 Gliwice, Poland.
  • Andrzej Cieszanowski
    Department of Radiology I, The Maria Sklodowska-Curie National Research Institute of Oncology, Warsaw, Poland.
  • Joanna Polanska
    Department of Data Science and Engineering, Silesian University of Technology, 44-100 Gliwice, Poland.