Leveraging mid-infrared spectroscopic imaging and deep learning for tissue subtype classification in ovarian cancer.

Journal: The Analyst
Published Date:

Abstract

Mid-infrared spectroscopic imaging (MIRSI) is an emerging class of label-free techniques being leveraged for digital histopathology. Modern histopathologic identification of ovarian cancer involves tissue staining followed by morphological pattern recognition. This process is time-consuming and subjective and requires extensive expertise. This paper presents the first label-free, quantitative, and automated histological recognition of ovarian tissue subtypes using a new MIRSI technique. This optical photothermal infrared (O-PTIR) imaging technique provides a 10× enhancement in spatial resolution relative to prior instruments. It enables sub-cellular spectroscopic investigation of tissue at biochemically important fingerprint wavelengths. We demonstrate that the enhanced resolution of sub-cellular features, combined with spectroscopic information, enables reliable classification of ovarian cell subtypes achieving a classification accuracy of 0.98. Moreover, we present a statistically robust analysis from 78 patient samples with over 60 million data points. We show that sub-cellular resolution from five wavenumbers is sufficient to outperform state-of-the-art diffraction-limited techniques with up to 235 wavenumbers. We also propose two quantitative biomarkers based on the relative quantities of epithelia and stroma that exhibit efficacy in early cancer diagnosis. This paper demonstrates that combining deep learning with intrinsic biochemical MIRSI measurements enables quantitative evaluation of cancerous tissue, improving the rigor and reproducibility of histopathology.

Authors

  • Chalapathi Charan Gajjela
    University of Houston, 4226 Martin Luther King Boulevard, N308 Engineering Building 1, Houston, TX, 77584, USA. rkreddy@uh.edu.
  • Matthew Brun
    Rice University, Houston, TX, USA.
  • Rupali Mankar
    University of Houston, 4226 Martin Luther King Boulevard, N308 Engineering Building 1, Houston, TX, 77584, USA. rkreddy@uh.edu.
  • Sara Corvigno
    Department of Immunology, Genetics and Pathology, Uppsala University, Uppsala 751 85, Sweden; Department of Oncology-Pathology, Karolinska Institutet, Stockholm, Sweden.
  • Noah Kennedy
    Milwaukee School of Engineering, Milwaukee, WI, USA.
  • Yanping Zhong
    The First Hospital of Jilin University, Changchun, Jilin, 130021, China.
  • Jinsong Liu
    Zhejiang Huijia Biotechnology Co. Ltd., Anji, Zhejiang, 313307, PR China.
  • Anil K Sood
    The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA.
  • David Mayerich
    Department of Electrical and Computer Engineering, University of Houston, Houston, Texas, USA.
  • Sebastian Berisha
    Milwaukee School of Engineering, Milwaukee, WI, USA.
  • Rohith Reddy
    University of Houston, 4226 Martin Luther King Boulevard, N308 Engineering Building 1, Houston, TX, 77584, USA. rkreddy@uh.edu.