Deep Learning for Histopathological Assessment of Esophageal Adenocarcinoma Precursor Lesions.

Journal: Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc
Published Date:

Abstract

Histopathological assessment of esophageal biopsies is a key part in the management of patients with Barrett esophagus (BE) but prone to observer variability and reliable diagnostic methods are needed. Artificial intelligence (AI) is emerging as a powerful tool for aided diagnosis but often relies on abstract test and validation sets while real-world behavior is unknown. In this study, we developed a 2-stage AI system for histopathological assessment of BE-related dysplasia using deep learning to enhance the efficiency and accuracy of the pathology workflow. The AI system was developed and trained on 290 whole-slide images (WSIs) that were annotated at glandular and tissue levels. The system was designed to identify individual glands, grade dysplasia, and assign a WSI-level diagnosis. The proposed method was evaluated by comparing the performance of our AI system with that of a large international and heterogeneous group of 55 gastrointestinal pathologists assessing 55 digitized biopsies spanning the complete spectrum of BE-related dysplasia. The AI system correctly graded 76.4% of the WSIs, surpassing the performance of 53 out of the 55 participating pathologists. Furthermore, the receiver-operating characteristic analysis showed that the system's ability to predict the absence (nondysplastic BE) versus the presence of any dysplasia was with an area under the curve of 0.94 and a sensitivity of 0.92 at a specificity of 0.94. These findings demonstrate that this AI system has the potential to assist pathologists in assessment of BE-related dysplasia. The system's outputs could provide a reliable and consistent secondary diagnosis in challenging cases or be used for triaging low-risk nondysplastic biopsies, thereby reducing the workload of pathologists and increasing throughput.

Authors

  • Michel Botros
    Department of Pathology, Amsterdam University Medical Centers, Amsterdam, The Netherlands; Department of Biomedical Engineering and Physics, Amsterdam University Medical Centers, Amsterdam, The Netherlands; Quantitative Healthcare Analysis Group, Informatics Institute, University of Amsterdam, Amsterdam, The Netherlands; Amsterdam Machine Learning Lab, Informatics Institute, University of Amsterdam, Amsterdam, The Netherlands.
  • Onno J de Boer
    Department of Pathology, Amsterdam UMC, University of Amsterdam, Amsterdam, The Netherlands.
  • Bryan Cardenas
    Department of Pathology, Amsterdam University Medical Centers, Amsterdam, The Netherlands; Amsterdam Machine Learning Lab, Informatics Institute, University of Amsterdam, Amsterdam, The Netherlands.
  • Erik J Bekkers
    Department of Mathematics and Computer Science, Eindhoven University of Technology, Eindhoven, the Netherlands.
  • Marnix Jansen
    Research Department of Pathology, Cancer Institute, University College London, London, United Kingdom.
  • Myrtle J van der Wel
    Department of Pathology, Amsterdam University Medical Centers, Amsterdam, The Netherlands.
  • Clara I Sanchez
  • Sybren L Meijer
    Department of Pathology, Amsterdam UMC, University of Amsterdam, Amsterdam, The Netherlands.