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Drug Development

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MultiscaleDTA: A multiscale-based method with a self-attention mechanism for drug-target binding affinity prediction.

Methods (San Diego, Calif.)
The task of predicting drug-target affinity (DTA) plays an increasingly important role in the early stage of in silico drug discovery and development. Currently, a variety of machine learning-based methods have been presented for DTA prediction and a...

Modeling DTA by Combining Multiple-Instance Learning with a Private-Public Mechanism.

International journal of molecular sciences
The prediction of the strengths of drug-target interactions, also called drug-target binding affinities (DTA), plays a fundamental role in facilitating drug discovery, where the goal is to find prospective drug candidates. With the increase in the nu...

GCHN-DTI: Predicting drug-target interactions by graph convolution on heterogeneous networks.

Methods (San Diego, Calif.)
Determining the interaction of drug and target plays a key role in the process of drug development and discovery. The calculation methods can predict new interactions and speed up the process of drug development. In recent studies, the network-based ...

Inferring Drug-Target Interactions Based on Random Walk and Convolutional Neural Network.

IEEE/ACM transactions on computational biology and bioinformatics
Computational strategies for identifying new drug-target interactions (DTIs) can guide the process of drug discovery, reduce the cost and time of drug development, and thus promote drug development. Most recently proposed methods predict DTIs via int...

CSatDTA: Prediction of Drug-Target Binding Affinity Using Convolution Model with Self-Attention.

International journal of molecular sciences
Drug discovery, which aids to identify potential novel treatments, entails a broad range of fields of science, including chemistry, pharmacology, and biology. In the early stages of drug development, predicting drug-target affinity is crucial. The pr...

A novel machine learning model based on sparse structure learning with adaptive graph regularization for predicting drug side effects.

Journal of biomedical informatics
Drug side effects are closely related to the success and failure of drug development. Here we present a novel machine learning method for side effect prediction. The proposed method treats side effect prediction as a multi-label learning problem and ...

Sequence-based drug-target affinity prediction using weighted graph neural networks.

BMC genomics
BACKGROUND: Affinity prediction between molecule and protein is an important step of virtual screening, which is usually called drug-target affinity (DTA) prediction. Its accuracy directly influences the progress of drug development. Sequence-based d...

Artificial Intelligence and Machine Learning for Lead-to-Candidate Decision-Making and Beyond.

Annual review of pharmacology and toxicology
The use of artificial intelligence (AI) and machine learning (ML) in pharmaceutical research and development has to date focused on research: target identification; docking-, fragment-, and motif-based generation of compound libraries; modeling of sy...

idse-HE: Hybrid embedding graph neural network for drug side effects prediction.

Journal of biomedical informatics
In drug development, unexpected side effects are the main reason for the failure of candidate drug trials. Discovering potential side effects of drugsin silicocan improve the success rate of drug screening. However, most previous works extracted and ...