AIMC Topic: Drug-Related Side Effects and Adverse Reactions

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Adverse drug event detection using natural language processing: A scoping review of supervised learning methods.

PloS one
To reduce adverse drug events (ADEs), hospitals need a system to support them in monitoring ADE occurrence routinely, rapidly, and at scale. Natural language processing (NLP), a computerized approach to analyze text data, has shown promising results ...

LiSA: an assisted literature search pipeline for detecting serious adverse drug events with deep learning.

BMC medical informatics and decision making
INTRODUCTION: Detecting safety signals attributed to a drug in scientific literature is a fundamental issue in pharmacovigilance. The constant increase in the volume of publications requires the automation of this tedious task, in order to find and e...

Predicting adverse drug effects: A heterogeneous graph convolution network with a multi-layer perceptron approach.

PloS one
We apply a heterogeneous graph convolution network (GCN) combined with a multi-layer perceptron (MLP) denoted by GCNMLP to explore the potential side effects of drugs. Here the SIDER, OFFSIDERS, and FAERS are used as the datasets. We integrate the dr...

Developing a deep learning natural language processing algorithm for automated reporting of adverse drug reactions.

Journal of biomedical informatics
The detection of adverse drug reactions (ADRs) is critical to our understanding of the safety and risk-benefit profile of medications. With an incidence that has not changed over the last 30 years, ADRs are a significant source of patient morbidity, ...

What place for intelligent automation and artificial intelligence to preserve and strengthen vigilance expertise in the face of increasing declarations?

Therapie
In 2018, the "Ateliers de Giens" (Giens Workshops) devoted a workshop to artificial intelligence (AI) and led its experts to confirm the potential contribution and theoretical benefit of AI in clinical research, pharmacovigilance, and in improving th...

Investigation of a Data Split Strategy Involving the Time Axis in Adverse Event Prediction Using Machine Learning.

Journal of chemical information and modeling
Adverse events are a serious issue in drug development, and many prediction methods using machine learning have been developed. The random split cross-validation is the de facto standard for model building and evaluation in machine learning, but care...

An empirical evaluation of sampling methods for the classification of imbalanced data.

PloS one
In numerous classification problems, class distribution is not balanced. For example, positive examples are rare in the fields of disease diagnosis and credit card fraud detection. General machine learning methods are known to be suboptimal for such ...

Language-agnostic pharmacovigilant text mining to elicit side effects from clinical notes and hospital medication records.

Basic & clinical pharmacology & toxicology
We sought to craft a drug safety signalling pipeline associating latent information in clinical free text with exposures to single drugs and drug pairs. Data arose from 12 secondary and tertiary public hospitals in two Danish regions, comprising appr...

Utilizing Deep Learning for Detecting Adverse Drug Events in Structured and Unstructured Regulatory Drug Data Sets.

Pharmaceutical medicine
BACKGROUND: The US Food and Drug Administration (FDA) collects and retains several data sets on post-market drugs and associated adverse events (AEs). The FDA Adverse Event Reporting System (FAERS) contains millions of AE reports submitted by the pub...