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Drug-Related Side Effects and Adverse Reactions

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Developing a deep learning natural language processing algorithm for automated reporting of adverse drug reactions.

Journal of biomedical informatics
The detection of adverse drug reactions (ADRs) is critical to our understanding of the safety and risk-benefit profile of medications. With an incidence that has not changed over the last 30 years, ADRs are a significant source of patient morbidity, ...

What place for intelligent automation and artificial intelligence to preserve and strengthen vigilance expertise in the face of increasing declarations?

Therapie
In 2018, the "Ateliers de Giens" (Giens Workshops) devoted a workshop to artificial intelligence (AI) and led its experts to confirm the potential contribution and theoretical benefit of AI in clinical research, pharmacovigilance, and in improving th...

Investigation of a Data Split Strategy Involving the Time Axis in Adverse Event Prediction Using Machine Learning.

Journal of chemical information and modeling
Adverse events are a serious issue in drug development, and many prediction methods using machine learning have been developed. The random split cross-validation is the de facto standard for model building and evaluation in machine learning, but care...

An empirical evaluation of sampling methods for the classification of imbalanced data.

PloS one
In numerous classification problems, class distribution is not balanced. For example, positive examples are rare in the fields of disease diagnosis and credit card fraud detection. General machine learning methods are known to be suboptimal for such ...

Language-agnostic pharmacovigilant text mining to elicit side effects from clinical notes and hospital medication records.

Basic & clinical pharmacology & toxicology
We sought to craft a drug safety signalling pipeline associating latent information in clinical free text with exposures to single drugs and drug pairs. Data arose from 12 secondary and tertiary public hospitals in two Danish regions, comprising appr...

Utilizing Deep Learning for Detecting Adverse Drug Events in Structured and Unstructured Regulatory Drug Data Sets.

Pharmaceutical medicine
BACKGROUND: The US Food and Drug Administration (FDA) collects and retains several data sets on post-market drugs and associated adverse events (AEs). The FDA Adverse Event Reporting System (FAERS) contains millions of AE reports submitted by the pub...

A novel machine learning model based on sparse structure learning with adaptive graph regularization for predicting drug side effects.

Journal of biomedical informatics
Drug side effects are closely related to the success and failure of drug development. Here we present a novel machine learning method for side effect prediction. The proposed method treats side effect prediction as a multi-label learning problem and ...

Multi-type feature fusion based on graph neural network for drug-drug interaction prediction.

BMC bioinformatics
BACKGROUND: Drug-Drug interactions (DDIs) are a challenging problem in drug research. Drug combination therapy is an effective solution to treat diseases, but it can also cause serious side effects. Therefore, DDIs prediction is critical in pharmacol...

idse-HE: Hybrid embedding graph neural network for drug side effects prediction.

Journal of biomedical informatics
In drug development, unexpected side effects are the main reason for the failure of candidate drug trials. Discovering potential side effects of drugsin silicocan improve the success rate of drug screening. However, most previous works extracted and ...