AIMC Topic: Machine Learning

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ComBat Harmonization for MRI Radiomics: Impact on Nonbinary Tissue Classification by Machine Learning.

Investigative radiology
OBJECTIVES: The aims of this study were to determine whether ComBat harmonization improves multiclass radiomics-based tissue classification in technically heterogeneous MRI data sets and to compare the performances of 2 ComBat variants.

Predicting functional consequences of SNPs on mRNA translation via machine learning.

Nucleic acids research
The functional impact of single nucleotide polymorphisms (SNPs) on translation has yet to be considered when prioritizing disease-causing SNPs from genome-wide association studies (GWAS). Here we apply machine learning models to genome-wide ribosome ...

Learning protein fitness landscapes with deep mutational scanning data from multiple sources.

Cell systems
One of the key points of machine learning-assisted directed evolution (MLDE) is the accurate learning of the fitness landscape, a conceptual mapping from sequence variants to the desired function. Here, we describe a multi-protein training scheme tha...

[Methodology and progress in adjusting time-dependent covariates in clinical prediction models].

Zhonghua liu xing bing xue za zhi = Zhonghua liuxingbingxue zazhi
Adjusting time-dependent covariates into prediction models may help improve model performance and expand clinical applications. The methodology of handling time-dependent covariates is limited in traditional regression strategies (i.e., landmark mode...

Practical considerations for specifying a super learner.

International journal of epidemiology
Common tasks encountered in epidemiology, including disease incidence estimation and causal inference, rely on predictive modelling. Constructing a predictive model can be thought of as learning a prediction function (a function that takes as input c...

Predictive overfitting in immunological applications: Pitfalls and solutions.

Human vaccines & immunotherapeutics
Overfitting describes the phenomenon where a highly predictive model on the training data generalizes poorly to future observations. It is a common concern when applying machine learning techniques to contemporary medical applications, such as predic...