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DNA sequence+shape kernel enables alignment-free modeling of transcription factor binding.

Bioinformatics (Oxford, England) Oct 1, 2017

MOTIVATION: Transcription factors (TFs) bind to specific DNA sequence motifs. Several lines of evidence suggest that TF-DNA binding is mediated in part by properties of the local DNA shape: the width of the minor groove, the relative orientations of ...

Software Protein Binding Genomics Transcription Factors Support Vector Machine Sequence Analysis, DNA DNA DNA-Binding Proteins Nucleic Acid Conformation Protein Array Analysis Binding Sites Nucleotide Motifs

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AIMC Topic: Protein Array Analysis

DNA sequence+shape kernel enables alignment-free modeling of transcription factor binding.

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AIMC Topic: Protein Array Analysis

DNA sequence+shape kernel enables alignment-free modeling of transcription factor binding.

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