AIMC Topic: Protein Structure, Tertiary

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Alignment-Free Methods for the Detection and Specificity Prediction of Adenylation Domains.

Methods in molecular biology (Clifton, N.J.) Jan 1, 2016
Identifying adenylation domains (A-domains) and their substrate specificity can aid the detection of nonribosomal peptide synthetases (NRPS) at genome/proteome level and allow inferring the structure of oligopeptides with relevant biological activiti...
Software Bacteria Proteomics Support Vector Machine Workflow Models, Biological Catalytic Domain Substrate Specificity Computer Graphics Protein Structure, Tertiary Peptide Synthases
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Assessing protein-protein interactions based on the semantic similarity of interacting proteins.

International journal of data mining and bioinformatics Jan 1, 2015
The Gene Ontology (GO) has been used in estimating the semantic similarity of proteins since it has the largest and reliable vocabulary of gene products and characteristics. We developed a new method which can assess Protein-Protein Interactions (PPI...
Humans Proteins Gene Ontology Protein Structure, Tertiary
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Artificial neural networks for dihedral angles prediction in enzyme loops: a novel approach.

International journal of bioinformatics research and applications Jan 1, 2015
Structure prediction of proteins is considered a limiting step and determining factor in drug development and in the introduction of new therapies. Since the 3D structures of proteins determine their functionalities, prediction of dihedral angles rem...
Neural Networks, Computer Computer Simulation Models, Molecular Models, Chemical Amino Acid Sequence Pattern Recognition, Automated Protein Conformation Molecular Sequence Data Protein Structure, Tertiary Enzymes Sequence Analysis, Protein
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