Modeling protective meningococcal antibody responses and factors influencing antibody persistence following vaccination with MenAfriVac using machine learning.

Journal: PloS one
PMID:

Abstract

Meningococcal meningitis poses a significant public health burden in the meningitis belt region of sub-Saharan Africa. The introduction of the meningococcal PsA-TT vaccine (MenAfriVac®) has successfully eliminated Neisseria meningitidis serogroup A (NmA) cases in the region. However, the duration of post-vaccination immunity and the need for booster doses remain uncertain. To address this knowledge gap, we developed computational models using machine learning techniques to improve the effectiveness of modeling in guiding vaccination strategies for the African meningitis belt. Using serologic data from previous clinical trials of PsA-TT, we proposed a short-term and a long-term model that integrated demographic and medical variables (such as age, height and weight) with previous antibody titer levels and vaccination information to predict NmA antibody titer levels following vaccination. In the short-term model, we found moderately high performance (R-squared = 0.59) for out-of-training-data subjects and even better performance (R squared = 0.83) in the long-term evaluation. Our models estimated the half-life of the vaccine to be 13.9 years for the study population overall, similar to previously reported estimates. Machine learning techniques offer several advantages over previous approaches, as they do not require multiple readings from the same subject, can be rigorously validated using a subset of subject data not used for training. The proposed approach also facilitates the interpretation of the relationship between input variables and antibody levels at a population level. By incorporating subject-specific demographic and medical variables, our models could potentially be used to tailor vaccination schedules to at-risk populations.

Authors

  • Md Nasir
    AI for Good Lab, Microsoft, Redmond, Washington, United States of America.
  • William B Weeks
    AI for Good Lab, Microsoft Corporation, Redmond, WA, United States.
  • Shahrzad Gholami
    AI for Good Research Lab, Microsoft, Redmond, WA, 98052, USA.
  • Anthony Marfin
    Center for Vaccine Innovation and Access, PATH, Seattle, Washington, United States of America.
  • Mark Alderson
    Center for Vaccine Innovation and Access, PATH, Seattle, Washington, United States of America.
  • Troy Leader
    Center for Vaccine Innovation and Access, PATH, Seattle, Washington, United States of America.
  • Brian Taliesin
    PATH, Seattle, WA, United States.
  • Rahul Dodhia
    AI for Good Research Lab, Microsoft, Redmond, Washington 98052, USA.
  • Juan Lavista Ferres
    AI for Good Research Lab, Microsoft, Redmond, Washington 98052, USA.
  • Niranjan Bhat
    Center for Vaccine Innovation and Access, PATH, Seattle, Washington, United States of America.