Common Variable Immunodeficiency Disorder: A Decade of Insights from a Cohort of 150 Patients in India and the Use of Machine Learning Algorithms to Predict Severity.

Journal: Journal of clinical immunology
Published Date:

Abstract

Common Variable Immunodeficiency (CVID) is a heterogeneous disorder characterized by impaired antibody production and recurrent infections. In this study we investigated the clinical and immunological features of CVID in Indian patients and develops a machine learning model for predicting disease severity. We retrospectively analyzed 150 patients diagnosed with CVID over a decade at a tertiary care center in India. The median age of diagnosis was 18 years, with a male predominance (62%). The majority of patients (66.6%) had a severe phenotype, with recurrent respiratory tract infections being the most common clinical manifestation (84.2%). Gastrointestinal complications were observed in 45% of patients, while autoimmune manifestations were seen in 21%. All patients exhibited hypogammaglobulinemia. IgA levels varied, with 7.8% normal and 14.5% undetectable. IgM levels were decreased in 85.5% of patients. B-cell analysis revealed 64.4% had reduced class-switched memory B cells, with 21.7% showing very low levels. Nine adult patients presented with late-onset combined immunodeficiency. Genetic testing, performed on 52 patients, identified underlying monogenic causes in 29 pediatric and 15 adult patients. LRBA deficiency was the most common genetic defect, found in seven pediatric and three adult patients. We developed a novel machine learning-based severity prediction model for CVID patients, utilizing readily available lymphocyte subsets, class-switched memory B cell counts, and serum immunoglobulin levels to provide an accessible and robust tool for predicting disease severity using Ameratunga's clinical severity score. Random Forest outperformed other models across all metrics, achieving an accuracy of 0.853 (95% CI: 0.840-0.866). Feature importance analysis across all models identified Th-Tc ratio, CD19, and IgM levels as the most influential predictors for severity prediction. Our study highlights the diverse clinical and immunological features of CVID in Indian patients, emphasizing the need for early diagnosis and individualized management strategies. The machine learning model developed using commonly available immune parameters provide a robust tool for predicting disease severity, potentially guiding treatment strategies to improve patient outcomes.

Authors

  • Umair Ahmed Bargir
    ICMR National Institute of Immunohaematology, Mumbai, India.
  • Priyanka Setia
    ICMR National Institute of Immunohaematology, Mumbai, India.
  • Mukesh Desai
    Bai Jerbai Wadia Hospital for Children, Mumbai, India.
  • Chandrakala S
    King Edward Memorial Hospital and Seth G.S. Medical College, Mumbai, India.
  • Aparna Dalvi
    ICMR National Institute of Immunohaematology, Mumbai, India.
  • Shweta Shinde
    ICMR National Institute of Immunohaematology, Mumbai, India.
  • Maya Gupta
    Department of Psychology, University of Alberta, Edmonton, Alberta, Canada.
  • Neha Jodhawat
    ICMR National Institute of Immunohaematology, Mumbai, India.
  • Amrutha Jose
    ICMR National Institute of Immunohaematology, Mumbai, India.
  • Mayuri Goriwale
    ICMR National Institute of Immunohaematology, Mumbai, India.
  • Reetika Malik Yadav
    ICMR National Institute of Immunohaematology, Mumbai, India.
  • Disha Vedpathak
    ICMR National Institute of Immunohaematology, Mumbai, India.
  • Lavina Temkar
    ICMR National Institute of Immunohaematology, Mumbai, India.
  • Snehal Shabrish
    ICMR National Institute of Immunohaematology, Mumbai, India.
  • Gouri Hule
    ICMR National Institute of Immunohaematology, Mumbai, India.
  • Vijaya Gowri
    Bai Jerbai Wadia Hospital for Children, Mumbai, India.
  • Prasad Taur
    Bai Jerbai Wadia Hospital for Children, Mumbai, India.
  • Amita Athavale
    King Edward Memorial Hospital and Seth G.S. Medical College, Mumbai, India.
  • Farah Jijina
    King Edward Memorial Hospital and Seth G.S. Medical College, Mumbai, India.
  • Shobna Bhatia
    King Edward Memorial Hospital and Seth G.S. Medical College, Mumbai, India.
  • Akash Shukla
    King Edward Memorial Hospital and Seth G.S. Medical College, Mumbai, India.
  • Manas Kalra
    Sir Ganga Ram Hospital, New Delhi, India.
  • Meena Sivasankaran
    Kanchi Kamakoti CHILDS Trust Hospital, Chennai, India.
  • Sarath Balaji
    Madras Medical College, Chennai, India.
  • Punit Jain
    Apollo Hospitals, Chennai, India.
  • Sujata Sharma
    Department of Biophysics, All India Institute of Medical Sciences, New Delhi-110029, India.
  • Harikrishnan Gangadharan
    Government Medical College, Kottayam, Kottayam, India.
  • Gaurav Narula
    Tata Memorial Hospital, Mumbai, India.
  • Ratna Sharma
    MCGM - Comprehensive Thalassemia Care, Mumbai, India.
  • Pranoti Kini
    MCGM - Comprehensive Thalassemia Care, Mumbai, India.
  • Mamta Mangalani
    MCGM - Comprehensive Thalassemia Care, Mumbai, India.
  • Abhishek Zanwar
    Department of Rheumatology, Ruby Hall Clinic, Pune, India.
  • Himanshi Chaudhary
    Ruby Hall Clinic, Pune, India.
  • Narendra Kumar Chaudhary
    All India Institute of Medical Sciences Bhopal, Bhopal, India.
  • Ujjawal Khurana
    All India Institute of Medical Sciences Bhopal, Bhopal, India.
  • Ashish Bavdekar
    KEM Hospital & Research Centre, Pune, India.
  • Girish Subramaniam
    Colours hospital, Nagpur, India.
  • Revathi Raj
    Apollo Hospitals Cancer Center, Chennai, India.
  • Subhaprakash Saniyal
    Fortis Hospital, Noida, India.
  • Nitin Shah
    P. D. Hinduja Hospital and Medical Research Centre, Mumbai, India.
  • Tehsin Petiwala
    Masina Hospital, Mumbai, India.
  • Prawin Kumar
    All India Institute of Medical Sciences Jodhpur, Jodhpur, India.
  • Venkatesh Pai
    All India Institute of Medical Sciences Rishikesh, Rishikesh, India.
  • Sagar Bhattad
    Aster CMI Hospital, Bangalore, India.
  • Abhinav Sengupta
    All India Institute of Medical Sciences, New Delhi, India.
  • Manish Soneja
    All India Institute of Medical Sciences, New Delhi, India.
  • Dayanand Upase
    Sassoon General Hospital, Pune, India.
  • Abhijeet Ganapule
    Niche Haematology Care, Kolhapur, India.
  • Indrani Talukdar
    Department of Biological Sciences, Birla Institute of Technology and Science, K K Birla Goa Campus, Zuarinagar 403726, Goa, India.
  • Manisha Madkaikar
    ICMR National Institute of Immunohaematology, Mumbai, India. madkaikarmanisha@gmail.com.