Deep Integrative Analysis for Survival Prediction.
Journal:
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing
Published Date:
Jan 1, 2018
Abstract
Survival prediction is very important in medical treatment. However, recent leading research is challenged by two factors: 1) the datasets usually come with multi-modality; and 2) sample sizes are relatively small. To solve the above challenges, we developed a deep survival learning model to predict patients' survival outcomes by integrating multi-view data. The proposed network contains two sub-networks, one view-specific and one common sub-network. We designated one CNN-based and one FCN-based sub-network to efficiently handle pathological images and molecular profiles, respectively. Our model first explicitly maximizes the correlation among the views and then transfers feature hierarchies from view commonality and specifically fine-tunes on the survival prediction task. We evaluate our method on real lung and brain tumor data sets to demonstrate the effectiveness of the proposed model using data with multiple modalities across different tumor types.