DeepciRGO: functional prediction of circular RNAs through hierarchical deep neural networks using heterogeneous network features.

Journal: BMC bioinformatics
PMID:

Abstract

BACKGROUND: Circular RNAs (circRNAs) are special noncoding RNA molecules with closed loop structures. Compared with the traditional linear RNA, circRNA is more stable and not easily degraded. Many studies have shown that circRNAs are involved in the regulation of various diseases and cancers. Determining the functions of circRNAs in mammalian cells is of great significance for revealing their mechanism of action in physiological and pathological processes, diagnosis and treatment of diseases. However, determining the functions of circRNAs on a large scale is a challenging task because of the high experimental costs.

Authors

  • Lei Deng
    1] Center for Brain Inspired Computing Research (CBICR), Department of Precision Instrument, Tsinghua University, Beijing 100084, China [2] Optical Memory National Engineering Research Center, Department of Precision Instrument, Tsinghua University, Beijing 100084, China.
  • Wei Lin
    Department of Geriatric Rehabilitation, Jiangbin Hospital, Nanning, China.
  • Jiacheng Wang
    Vanderbilt University, Nashville TN 37215, USA.
  • Jingpu Zhang
    School of Computer and Data Science, Henan University of Urban Construction, Pingdingshan, 467000, China.