Deep learning-radiomics integrated noninvasive detection of epidermal growth factor receptor mutations in non-small cell lung cancer patients.

Journal: Scientific reports
Published Date:

Abstract

This study focused on a novel strategy that combines deep learning and radiomics to predict epidermal growth factor receptor (EGFR) mutations in patients with non-small cell lung cancer (NSCLC) using computed tomography (CT). A total of 1280 patients with NSCLC who underwent contrast-enhanced CT scans and EGFR mutation testing before treatment were selected for the final study. Regions of interest were segmented from the CT images to extract radiomics features and obtain tumor images. These tumor images were input into a convolutional neural network model to extract 512 image features, which were combined with radiographic features and clinical data to predict the EGFR mutation. The generalization performance of the model was evaluated using external institutional data. The internal and external datasets contained 324 and 130 EGFR mutants, respectively. Sex, height, weight, smoking history, and clinical stage were significantly different between the EGFR-mutant patient groups. The EGFR mutations were predicted by combining the radiomics and clinical features, and an external validation dataset yielded an area under the curve (AUC) value of 0.7038. The model utilized 1280 tumor images, radiomics features, and clinical characteristics as input data and exhibited an AUC of approximately 0.81 and 0.78 during the primary cohort and external validation, respectively. These results indicate the feasibility of integrating radiomics analysis with deep learning for predicting EGFR mutations. CT-image-based genetic testing is a simple EGFR mutation prediction method, which can improve the prognosis of NSCLC patients and help establish personalized treatment strategies.

Authors

  • Seonhwa Kim
    Research Center, Software Division, NGeneBio, Seoul, 08390, Korea.
  • June Hyuck Lim
    Department of Radiation Oncology, Ajou University School of Medicine, Suwon, Republic of Korea.
  • Chul-Ho Kim
    Department of Otolaryngology, Ajou University School of Medicine, 164 Worldcup-ro, Yeongtong-gu, Suwon, 16499, Republic of Korea. ostium@ajou.ac.kr.
  • Jin Roh
    Department of Pathology, Asan Medical Center, University of Ulsan College of Medicine, Seoul, Republic of Korea.
  • Seulgi You
    Department of Radiology, Ajou University School of Medicine, Suwon, Republic of Korea.
  • Jeong-Seok Choi
    Department of Otorhinolaryngology-Head and Neck Surgery, Inha University College of Medicine, Incheon, Republic of Korea.
  • Jun Hyeok Lim
    Division of Pulmonology, Department of Internal Medicine, Inha University College of Medicine, Incheon, Republic of Korea.
  • Lucia Kim
    Department of Pathology, Inha University College of Medicine, Incheon, Republic of Korea.
  • Jae Won Chang
    Department of Otolaryngology-Head and Neck Surgery, Chungnam National University Hospital, Daejeon, Republic of Korea.
  • Dongil Park
    Division of Pulmonary, Allergy and Critical Care Medicine, Critical Care Medicine, Department of Internal Medicine, Chungnam National University Hospital, Daejeon, Republic of Korea.
  • Myung-Won Lee
    Department of Control and Instrumentation Engineering, Chosun University, 375 Seosuk-dong, Dong-gu, Gwangju 501-759, Republic of Korea.
  • Sup Kim
    Department of Radiation Oncology, Chungnam National University Hospital, Daejeon, Republic of Korea.
  • Jaesung Heo
    Department of Radiation Oncology, Ajou University School of Medicine, Suwon, Republic of Korea.