Machine learning-driven SERS analysis platform for rapid and accurate detection of precancerous lesions of gastric cancer.

Journal: Mikrochimica acta
Published Date:

Abstract

A novel approach is proposed leveraging surface-enhanced Raman spectroscopy (SERS) combined with machine learning (ML) techniques, principal component analysis (PCA)-centroid displacement-based nearest neighbor (CDNN). This label-free approach can identify slight abnormalities between SERS spectra of gastric lesions at different stages, offering a promising avenue for detection and prevention of precancerous lesion of gastric cancer (PLGC). The agaric-shaped nanoarray substrate was prepared using gas-liquid interface self-assembly and reactive ion etching (RIE) technology to measure SERS spectra of serum from mice model with gastric lesions at different stages, and then a SERS spectral recognition model was trained and constructed using the PCA-CDNN algorithm. The results showed that the agaric-shaped nanoarray substrate has good uniformity, stability, cleanliness, and SERS enhancement effect. The trained PCA-CDNN model not only found the most important features of PLGC, but also achieved satisfactory classification results with accuracy, area under curve (AUC), sensitivity, and specificity up to 100%. This demonstrated the enormous potential of this analysis platform in the diagnosis of PLGC.

Authors

  • Dawei Cao
    Yangzhou Polytechnic Institute, Yangzhou 225002, P. R. China.
  • Fanfeng Shi
    Yangzhou Polytechnic Institute, Yangzhou 225002, P. R. China.
  • JinXin Sheng
    Department of General Surgery, Nantong Haimen People's Hospital, Nantong, 226100, China.
  • Jinhua Zhu
    University of Science and Technology of China, Hefei, Anhui 230027, China.
  • Hongjun Yin
    Department of Gastroenterology, Yangzhong People's Hospital, Zhenjiang, 212200, China.
  • ShiChen Qin
    Department of General Surgery, Nantong Haimen People's Hospital, Nantong, 226100, China.
  • Jie Yao
    Key Laboratory of Shaanxi Province for Craniofacial Precision Medicine Research, College of Stomatology, Xi'an Jiaotong University, Xi'an, Shaanxi, China State Key Laboratory of Oral Diseases and National Clinical Research Center for Oral Diseases and Department of Oral and Maxillofacial Surgery, West China College of Stomatology, Sichuan University, Chengdu, Sichuan, China.
  • LiangFei Zhu
    Department of General Surgery, Nantong Haimen People's Hospital, Nantong, 226100, China.
  • JinJun Lu
    Department of General Surgery, Nantong Haimen People's Hospital, Nantong, 226100, China.
  • Xiaoyong Wang
    Genentech, Inc., South San Francisco, CA, USA. wang.xiaoyong@gene.com.