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Drug Interactions

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IMSE: interaction information attention and molecular structure based drug drug interaction extraction.

BMC bioinformatics
BACKGROUND: Extraction of drug drug interactions from biomedical literature and other textual data is an important component to monitor drug-safety and this has attracted attention of many researchers in healthcare. Existing works are more pivoted ar...

A Comprehensive Review of Computational Methods For Drug-Drug Interaction Detection.

IEEE/ACM transactions on computational biology and bioinformatics
The detection of drug-drug interactions (DDIs) is a crucial task for drug safety surveillance, which provides effective and safe co-prescriptions of multiple drugs. Since laboratory researches are often complicated, costly and time-consuming, it's ur...

Matrix factorization with denoising autoencoders for prediction of drug-target interactions.

Molecular diversity
Drug-target interaction is crucial in the discovery of new drugs. Computational methods can be used to identify new drug-target interactions at low costs and with reasonable accuracy. Recent studies pay more attention to machine-learning methods, ran...

Does adding the drug-drug similarity to drug-target interaction prediction methods make a noticeable improvement in their efficiency?

BMC bioinformatics
Predicting drug-target interactions (DTIs) has become an important bioinformatics issue because it is one of the critical and preliminary stages of drug repositioning. Therefore, scientists are trying to develop more accurate computational methods fo...

A Drug Recommendation Model Based on Message Propagation and DDI Gating Mechanism.

IEEE journal of biomedical and health informatics
Drug recommendation task based on the deep learning model has been widely studied and applied in the health care field in recent years. However, the accuracy of drug recommendation models still needs to be improved. In addition, the existing recommen...

Drug-target interaction prediction using reliable negative samples and effective feature selection methods.

Journal of pharmacological and toxicological methods
Machine learning-based approaches in the field of drug discovery have dramatically reduced the time and cost of the laboratory process of detecting potential drug-target interactions (DTIs). Standard binary classifiers require both positive and negat...

Multi-type feature fusion based on graph neural network for drug-drug interaction prediction.

BMC bioinformatics
BACKGROUND: Drug-Drug interactions (DDIs) are a challenging problem in drug research. Drug combination therapy is an effective solution to treat diseases, but it can also cause serious side effects. Therefore, DDIs prediction is critical in pharmacol...

TP-DDI: A Two-Pathway Deep Neural Network for Drug-Drug Interaction Prediction.

Interdisciplinary sciences, computational life sciences
Adverse drug-drug interactions (DDIs) can severely damage the body. Thus, it is essential to accurately predict DDIs. DDIs are complex processes in which many factors can cause interactions. Rather than merely considering one or two of the factors, w...

HGDTI: predicting drug-target interaction by using information aggregation based on heterogeneous graph neural network.

BMC bioinformatics
BACKGROUND: In research on new drug discovery, the traditional wet experiment has a long period. Predicting drug-target interaction (DTI) in silico can greatly narrow the scope of search of candidate medications. Excellent algorithm model may be more...