AIMC Topic: Natural Language Processing

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Automated Extraction of Substance Use Information from Clinical Texts.

AMIA ... Annual Symposium proceedings. AMIA Symposium
Within clinical discourse, social history (SH) includes important information about substance use (alcohol, drug, and nicotine use) as key risk factors for disease, disability, and mortality. In this study, we developed and evaluated a natural langua...

Predicting Health Care Utilization After Behavioral Health Referral Using Natural Language Processing and Machine Learning.

AMIA ... Annual Symposium proceedings. AMIA Symposium
Mental health problems are an independent predictor of increased healthcare utilization. We created random forest classifiers for predicting two outcomes following a patient's first behavioral health encounter: decreased utilization by any amount (AU...

Automated Classification of Consumer Health Information Needs in Patient Portal Messages.

AMIA ... Annual Symposium proceedings. AMIA Symposium
Patients have diverse health information needs, and secure messaging through patient portals is an emerging means by which such needs are expressed and met. As patient portal adoption increases, growing volumes of secure messages may burden healthcar...

A Study of Neural Word Embeddings for Named Entity Recognition in Clinical Text.

AMIA ... Annual Symposium proceedings. AMIA Symposium
Clinical Named Entity Recognition (NER) is a critical task for extracting important patient information from clinical text to support clinical and translational research. This study explored the neural word embeddings derived from a large unlabeled c...

Finding Cervical Cancer Symptoms in Swedish Clinical Text using a Machine Learning Approach and NegEx.

AMIA ... Annual Symposium proceedings. AMIA Symposium
Detection of early symptoms in cervical cancer is crucial for early treatment and survival. To find symptoms of cervical cancer in clinical text, Named Entity Recognition is needed. In this paper the Clinical Entity Finder, a machine-learning tool tr...

Towards a Generalizable Time Expression Model for Temporal Reasoning in Clinical Notes.

AMIA ... Annual Symposium proceedings. AMIA Symposium
Accurate temporal identification and normalization is imperative for many biomedical and clinical tasks such as generating timelines and identifying phenotypes. A major natural language processing challenge is developing and evaluating a generalizabl...

Scaling Out and Evaluation of OBSecAn, an Automated Section Annotator for Semi-Structured Clinical Documents, on a Large VA Clinical Corpus.

AMIA ... Annual Symposium proceedings. AMIA Symposium
"Identifying and labeling" (annotating) sections improves the effectiveness of extracting information stored in the free text of clinical documents. OBSecAn, an automated ontology-based section annotator, was developed to identify and label sections ...

Recognizing Disjoint Clinical Concepts in Clinical Text Using Machine Learning-based Methods.

AMIA ... Annual Symposium proceedings. AMIA Symposium
Clinical concept recognition (CCR) is a fundamental task in clinical natural language processing (NLP) field. Almost all current machine learning-based CCR systems can only recognize clinical concepts of consecutive words (called consecutive clinical...

Automatic Extraction and Post-coordination of Spatial Relations in Consumer Language.

AMIA ... Annual Symposium proceedings. AMIA Symposium
To incorporate ontological concepts in natural language processing (NLP) it is often necessary to combine simple concepts into complex concepts (post-coordination). This is especially true in consumer language, where a more limited vocabulary forces ...

Homophily of Vocabulary Usage: Beneficial Effects of Vocabulary Similarity on Online Health Communities Participation.

AMIA ... Annual Symposium proceedings. AMIA Symposium
Online health communities provide popular platforms for individuals to exchange psychosocial support and form ties. Although regular active participation (i.e., posting to interact with other members) in online health communities can provide importan...