AIMC Topic: Protein Folding
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Comparative evaluation of shape retrieval methods on macromolecular surfaces: an application of computer vision methods in structural bioinformatics.
Bioinformatics (Oxford, England)
Dec 7, 2021
MOTIVATION: The investigation of the structure of biological systems at the molecular level gives insights about their functions and dynamics. Shape and surface of biomolecules are fundamental to molecular recognition events. Characterizing their geo...
Applying and improving AlphaFold at CASP14.
Proteins
Dec 1, 2021
We describe the operation and improvement of AlphaFold, the system that was entered by the team AlphaFold2 to the "human" category in the 14th Critical Assessment of Protein Structure Prediction (CASP14). The AlphaFold system entered in CASP14 is ent...
Improving protein fold recognition using triplet network and ensemble deep learning.
Briefings in bioinformatics
Nov 5, 2021
Protein fold recognition is a critical step toward protein structure and function prediction, aiming at providing the most likely fold type of the query protein. In recent years, the development of deep learning (DL) technique has led to massive adva...
Why can deep convolutional neural networks improve protein fold recognition? A visual explanation by interpretation.
Briefings in bioinformatics
Sep 2, 2021
As an essential task in protein structure and function prediction, protein fold recognition has attracted increasing attention. The majority of the existing machine learning-based protein fold recognition approaches strongly rely on handcrafted featu...
AlphaFold2 and the future of structural biology.
Nature structural & molecular biology
Sep 1, 2021
ModFOLD8: accurate global and local quality estimates for 3D protein models.
Nucleic acids research
Jul 2, 2021
Methods for estimating the quality of 3D models of proteins are vital tools for driving the acceptance and utility of predicted tertiary structures by the wider bioscience community. Here we describe the significant major updates to ModFOLD, which ha...
The breakthrough in protein structure prediction.
The Biochemical journal
May 28, 2021
Proteins are the essential agents of all living systems. Even though they are synthesized as linear chains of amino acids, they must assume specific three-dimensional structures in order to manifest their biological activity. These structures are ful...
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