AIMC Topic: Repetitive Sequences, Nucleic Acid

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PolyCRACKER, a robust method for the unsupervised partitioning of polyploid subgenomes by signatures of repetitive DNA evolution.

BMC genomics Jul 12, 2019
BACKGROUND: Our understanding of polyploid genomes is limited by our inability to definitively assign sequences to a specific subgenome without extensive prior knowledge like high resolution genetic maps or genome sequences of diploid progenitors. In...
Phylogeny Genomics Evolution, Molecular Unsupervised Machine Learning Triticum Nicotiana Genome, Plant DNA, Plant Polyploidy Repetitive Sequences, Nucleic Acid
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HECIL: A Hybrid Error Correction Algorithm for Long Reads with Iterative Learning.

Scientific reports Jul 2, 2018
Second-generation DNA sequencing techniques generate short reads that can result in fragmented genome assemblies. Third-generation sequencing platforms mitigate this limitation by producing longer reads that span across complex and repetitive regions...
Machine Learning Escherichia coli Sequence Analysis, DNA High-Throughput Nucleotide Sequencing Saccharomyces cerevisiae Mosquito Vectors Repetitive Sequences, Nucleic Acid
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Deep Learning-Based Classification of CRISPR Loci Using Repeat Sequences.

ACS synthetic biology May 16, 2025
With the widespread application of the CRISPR-Cas system in gene editing and related fields, along with the increasing availability of metagenomic data, the demand for detecting and classifying CRISPR-Cas systems in metagenomic data sets has grown si...
Neural Networks, Computer Deep Learning CRISPR-Cas Systems Clustered Regularly Interspaced Short Palindromic Repeats Gene Editing Repetitive Sequences, Nucleic Acid
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