A Deep Learning-Enabled Workflow to Estimate Real-World Progression-Free Survival in Patients With Metastatic Breast Cancer: Study Using Deidentified Electronic Health Records.

Journal: JMIR cancer
PMID:

Abstract

BACKGROUND: Progression-free survival (PFS) is a crucial endpoint in cancer drug research. Clinician-confirmed cancer progression, namely real-world PFS (rwPFS) in unstructured text (ie, clinical notes), serves as a reasonable surrogate for real-world indicators in ascertaining progression endpoints. Response evaluation criteria in solid tumors (RECIST) is traditionally used in clinical trials using serial imaging evaluations but is impractical when working with real-world data. Manual abstraction of clinical progression from unstructured notes remains the gold standard. However, this process is a resource-intensive, time-consuming process. Natural language processing (NLP), a subdomain of machine learning, has shown promise in accelerating the extraction of tumor progression from real-world data in recent years.

Authors

  • Gowtham Varma
    Department of Clinical Sciences, Nference, 4th Floor, Indiqube, Golf View Campus Tower-2, 22, 3rd Cross Rd, Murugeshpalya, S R Layout, Bangalore, 560017, India, 91 8728831787.
  • Rohit Kumar Yenukoti
    Department of Clinical Sciences, Nference, 4th Floor, Indiqube, Golf View Campus Tower-2, 22, 3rd Cross Rd, Murugeshpalya, S R Layout, Bangalore, 560017, India, 91 8728831787.
  • Praveen Kumar M
    Department of Clinical Sciences, Nference, 4th Floor, Indiqube, Golf View Campus Tower-2, 22, 3rd Cross Rd, Murugeshpalya, S R Layout, Bangalore, 560017, India, 91 8728831787.
  • Bandlamudi Sai Ashrit
    Department of Clinical Sciences, Nference, 4th Floor, Indiqube, Golf View Campus Tower-2, 22, 3rd Cross Rd, Murugeshpalya, S R Layout, Bangalore, 560017, India, 91 8728831787.
  • K Purushotham
    Department of Clinical Sciences, Nference, 4th Floor, Indiqube, Golf View Campus Tower-2, 22, 3rd Cross Rd, Murugeshpalya, S R Layout, Bangalore, 560017, India, 91 8728831787.
  • C Subash
    Department of Clinical Sciences, Nference, 4th Floor, Indiqube, Golf View Campus Tower-2, 22, 3rd Cross Rd, Murugeshpalya, S R Layout, Bangalore, 560017, India, 91 8728831787.
  • Sunil Kumar Ravi
    Department of Clinical Sciences, Nference, 4th Floor, Indiqube, Golf View Campus Tower-2, 22, 3rd Cross Rd, Murugeshpalya, S R Layout, Bangalore, 560017, India, 91 8728831787.
  • Verghese Kurien
    Department of Clinical Sciences, Nference, 4th Floor, Indiqube, Golf View Campus Tower-2, 22, 3rd Cross Rd, Murugeshpalya, S R Layout, Bangalore, 560017, India, 91 8728831787.
  • Avinash Aman
    Department of Data Science and Engineering, Nference, Bangalore, India.
  • Mithun Manoharan
    Department of Clinical Sciences, Nference, 4th Floor, Indiqube, Golf View Campus Tower-2, 22, 3rd Cross Rd, Murugeshpalya, S R Layout, Bangalore, 560017, India, 91 8728831787.
  • Shashank Jaiswal
    Department of Data Science and Engineering, Nference, Bangalore, India.
  • Akash Anand
    nference Labs, Bengaluru, Karnataka 560017, India.
  • Rakesh Barve
    nference Labs, Bengaluru, Karnataka 560017, India.
  • Viswanathan Thiagarajan
    nference Labs, Bengaluru, Karnataka 560017, India.
  • Patrick Lenehan
    Department of Clinical Sciences, Nference, Cambridge, MA, United States.
  • Scott A Soefje
    Department of Pharmacy, Director of Pharmacy, Mayo Clinic, Rochester, MN, United States.
  • Venky Soundararajan
    nference, One Main Street, Cambridge, MA 02142, USA.