Prognostic model of lung adenocarcinoma from the perspective of cancer-associated fibroblasts using single-cell and bulk RNA-sequencing.

Journal: Scientific reports
Published Date:

Abstract

Cancer-associated fibroblasts (CAFs) play important roles in the progression of lung adenocarcinoma (LUAD). We examined CAF subgroups via gene ontology, pseudo-time, and cell communication analyses and explored their prognostic value in LUAD using a digital cytometric machine learning algorithm. Next, we got a prognostic model based on CAF subgroups. We also screened potential therapeutic target genes in LUAD and experimentally validated the proliferation, migration, and invasion phenotypes related to these target genes. We identified myofibroblastic CAFs (MyCAFs) and Immune-related CAFs (ImmCAFs) as the major CAF subgroups in LUAD. Further, our inverse convolution algorithm showed that MyCAFs have prognostic potential in LUAD, and via LASSO-COX model regression, we obtained a MyCAFs-related prognostic model. We found POSTN as a potential therapeutic target in LUAD. These findings serve as a foundation for further studies on CAFs.

Authors

  • Jiarui Zhao
    College of First Clinical Medicine, Shandong University of Traditional Chinese Medicine, Jinan, Shandong, China.
  • Chuanqing Jing
    College of First Clinical Medicine, Shandong University of Traditional Chinese Medicine, Jinan, Shandong, China.
  • Rui Fan
    Department of Biomedical Informatics, Department of Physiology and Pathophysiology, Center for Noncoding RNA Medicine, MOE Key Lab of Cardiovascular Sciences, School of Basic Medical Sciences, Peking University, 38 Xueyuan Rd, Beijing, 100191, China.
  • Wei Zhang
    The First Affiliated Hospital of Nanchang University, Nanchang, China.