Future of biomarker evaluation in the realm of artificial intelligence algorithms: application in improved therapeutic stratification of patients with breast and prostate cancer.

Journal: Journal of clinical pathology
Published Date:

Abstract

Clinical workflows in oncology depend on predictive and prognostic biomarkers. However, the growing number of complex biomarkers contributes to costly and delayed decision-making in routine oncology care and treatment. As cancer is expected to rank as the leading cause of death and the single most important barrier to increasing life expectancy in the 21st century, there is a major emphasis on precision medicine, particularly individualisation of treatment through better prediction of patient outcome. Over the past few years, both surgical and pathology specialties have suffered cutbacks and a low uptake of pathology specialists means a solution is required to enable high-throughput screening and personalised treatment in this area to alleviate bottlenecks. Digital imaging in pathology has undergone an exponential period of growth. Deep-learning (DL) platforms for hematoxylin and eosin (H&E) image analysis, with preliminary artificial intelligence (AI)-based grading capabilities of specimens, can evaluate image characteristics which may not be visually apparent to a pathologist and offer new possibilities for better modelling of disease appearance and possibly improve the prediction of disease stage and patient outcome. Although digital pathology and AI are still emerging areas, they are the critical components for advancing personalised medicine. Integration of transcriptomic analysis, clinical information and AI-based image analysis is yet an uncultivated field by which healthcare professionals can make improved treatment decisions in cancer. This short review describes the potential application of integrative AI in offering better detection, quantification, classification, prognosis and prediction of breast and prostate cancer and also highlights the utilisation of machine learning systems in biomarker evaluation.

Authors

  • Jenny Fitzgerald
    Deciphex, Dublin, Ireland.
  • Debra Higgins
    OncoAssure, Nova UCD, Belfield Innovation Park, Dublin, Ireland.
  • Claudia Mazo Vargas
    School of Biomolecular and Biomedical Science, Conway Institute, University College Dublin, Dublin, Ireland.
  • William Watson
    School of Biomolecular and Biomedical Science, Conway Institute, University College Dublin, Dublin, Ireland.
  • Catherine Mooney
    School of Computer Science, UCD Institute for Discovery, University College Dublin, Belfield, Dublin 4, D04 V1W8, Ireland.
  • Arman Rahman
    OncoMark, Dublin, Ireland.
  • Niamh Aspell
    Invent Building, Deciphex Ltd, Dublin City University, Dublin, Ireland.
  • Amy Connolly
    Invent Building, Deciphex Ltd, Dublin City University, Dublin, Ireland.
  • Claudia Aura Gonzalez
    School of Biomolecular and Biomedical Science, Conway Institute, University College Dublin, Dublin, Ireland.
  • William Gallagher
    School of Biomolecular and Biomedical Science, Conway Institute, University College Dublin, Dublin, Ireland.