AIMC Topic: Antibodies

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Computational Methods in Immunology and Vaccinology: Design and Development of Antibodies and Immunogens.

Journal of chemical theory and computation
The design of new biomolecules able to harness immune mechanisms for the treatment of diseases is a prime challenge for computational and simulative approaches. For instance, in recent years, antibodies have emerged as an important class of therapeut...

ImmuneBuilder: Deep-Learning models for predicting the structures of immune proteins.

Communications biology
Immune receptor proteins play a key role in the immune system and have shown great promise as biotherapeutics. The structure of these proteins is critical for understanding their antigen binding properties. Here, we present ImmuneBuilder, a set of de...

Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies.

Nature communications
Antibodies have the capacity to bind a diverse set of antigens, and they have become critical therapeutics and diagnostic molecules. The binding of antibodies is facilitated by a set of six hypervariable loops that are diversified through genetic rec...

Low-data interpretable deep learning prediction of antibody viscosity using a biophysically meaningful representation.

Scientific reports
Deep learning, aided by the availability of big data sets, has led to substantial advances across many disciplines. However, many scientific problems of practical interest lack sufficiently large datasets amenable to deep learning. Prediction of anti...

Smart Graphene-Based Electrochemical Nanobiosensor for Clinical Diagnosis: Review.

Sensors (Basel, Switzerland)
The technological improvement in the field of physics, chemistry, electronics, nanotechnology, biology, and molecular biology has contributed to the development of various electrochemical biosensors with a broad range of applications in healthcare se...

Computational and artificial intelligence-based methods for antibody development.

Trends in pharmacological sciences
Due to their high target specificity and binding affinity, therapeutic antibodies are currently the largest class of biotherapeutics. The traditional largely empirical antibody development process is, while mature and robust, cumbersome and has signi...

AbAgIntPre: A deep learning method for predicting antibody-antigen interactions based on sequence information.

Frontiers in immunology
INTRODUCTION: Antibody-mediated immunity is an essential part of the immune system in vertebrates. The ability to specifically bind to antigens allows antibodies to be widely used in the therapy of cancers and other critical diseases. A key step in a...

NanoNet: Rapid and accurate end-to-end nanobody modeling by deep learning.

Frontiers in immunology
Antibodies are a rapidly growing class of therapeutics. Recently, single domain camelid VHH antibodies, and their recognition nanobody domain (Nb) appeared as a cost-effective highly stable alternative to full-length antibodies. There is a growing ne...

Simultaneous phenotyping of five Rh red blood cell antigens on a paper-based analytical device combined with deep learning for rapid and accurate interpretation.

Analytica chimica acta
Both the ABO and Rhesus (Rh) blood groups play crucial roles in blood transfusion medicine. Herein, we report a simple and low-cost paper-based analytical device (PAD) for phenotyping red blood cell (RBC) antigens. Using this Rh typing format, 5 Rh a...

Leveraging Sequential and Spatial Neighbors Information by Using CNNs Linked With GCNs for Paratope Prediction.

IEEE/ACM transactions on computational biology and bioinformatics
Antibodies consisting of variable and constant regions, are a special type of proteins playing a vital role in immune system of the vertebrate. They have the remarkable ability to bind a large range of diverse antigens with extraordinary affinity and...