AIMC Topic: Biological Ontologies

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Semantically enabling clinical decision support recommendations.

Journal of biomedical semantics Jul 18, 2023
BACKGROUND: Clinical decision support systems have been widely deployed to guide healthcare decisions on patient diagnosis, treatment choices, and patient management through evidence-based recommendations. These recommendations are typically derived ...
Humans Software Decision Support Systems, Clinical Publications Knowledge Bases Biological Ontologies
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Self-prediction of relations in GO facilitates its quality auditing.

Journal of biomedical informatics Jul 10, 2023
As applications of the gene ontology (GO) increase rapidly in the biomedical field, quality auditing of it is becoming more and more important. Existing auditing methods are mostly based on rules, observed patterns or hypotheses. In this study, we pr...
Machine Learning Biological Ontologies Gene Ontology
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Features of a FAIR vocabulary.

Journal of biomedical semantics Jun 1, 2023
BACKGROUND: The Findable, Accessible, Interoperable and Reusable(FAIR) Principles explicitly require the use of FAIR vocabularies, but what precisely constitutes a FAIR vocabulary remains unclear. Being able to define FAIR vocabularies, identify feat...
Biological Ontologies Vocabulary, Controlled Vocabulary
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Automated approach for quality assessment of RDF resources.

BMC medical informatics and decision making May 10, 2023
INTRODUCTION: The Semantic Web community provides a common Resource Description Framework (RDF) that allows representation of resources such that they can be linked. To maximize the potential of linked data - machine-actionable interlinked resources ...
Humans Delivery of Health Care Biological Ontologies
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Logical definition-based identification of potential missing concepts in SNOMED CT.

BMC medical informatics and decision making May 9, 2023
BACKGROUND: Biomedical ontologies are representations of biomedical knowledge that provide terms with precisely defined meanings. They play a vital role in facilitating biomedical research in a cross-disciplinary manner. Quality issues of biomedical ...
Humans Language Biomedical Research Systematized Nomenclature of Medicine Biological Ontologies Knowledge
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The Ontology of Biological Attributes (OBA)-computational traits for the life sciences.

Mammalian genome : official journal of the International Mammalian Genome Society Apr 19, 2023
Existing phenotype ontologies were originally developed to represent phenotypes that manifest as a character state in relation to a wild-type or other reference. However, these do not include the phenotypic trait or attribute categories required for ...
Phenotype Genome-Wide Association Study Biological Ontologies Biological Science Disciplines
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Developing a Knowledge Graph for Pharmacokinetic Natural Product-Drug Interactions.

Journal of biomedical informatics Mar 17, 2023
BACKGROUND: Pharmacokinetic natural product-drug interactions (NPDIs) occur when botanical or other natural products are co-consumed with pharmaceutical drugs. With the growing use of natural products, the risk for potential NPDIs and consequent adve...
Biological Products Pharmaceutical Preparations Drug Interactions Semantics Biological Ontologies Pattern Recognition, Automated
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Content and quality of physical activity ontologies: a systematic review.

The international journal of behavioral nutrition and physical activity Mar 13, 2023
INTRODUCTION: Ontologies are a formal way to represent knowledge in a particular field and have the potential to transform the field of health promotion and digital interventions. However, few researchers in physical activity (PA) are familiar with o...
Humans Databases, Factual Biological Ontologies
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The Environmental Conditions, Treatments, and Exposures Ontology (ECTO): connecting toxicology and exposure to human health and beyond.

Journal of biomedical semantics Feb 24, 2023
BACKGROUND: Evaluating the impact of environmental exposures on organism health is a key goal of modern biomedicine and is critically important in an age of greater pollution and chemicals in our environment. Environmental health utilizes many differ...
Humans Databases, Factual Biological Ontologies
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Defining the distance between diseases using SNOMED CT embeddings.

Journal of biomedical informatics Feb 3, 2023
Characterizing disease relationships is essential to biomedical research to understand disease etiology and improve clinical decision-making. Measurements of distance between disease pairs enable valuable research tasks, such as subgrouping patients ...
Humans Delivery of Health Care Electronic Health Records Systematized Nomenclature of Medicine Biological Ontologies International Classification of Diseases
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