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Macromolecular Substances

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A convolutional autoencoder approach for mining features in cellular electron cryo-tomograms and weakly supervised coarse segmentation.

Journal of structural biology
Cellular electron cryo-tomography enables the 3D visualization of cellular organization in the near-native state and at submolecular resolution. However, the contents of cellular tomograms are often complex, making it difficult to automatically isola...

Using support vector machines to improve elemental ion identification in macromolecular crystal structures.

Acta crystallographica. Section D, Biological crystallography
In the process of macromolecular model building, crystallographers must examine electron density for isolated atoms and differentiate sites containing structured solvent molecules from those containing elemental ions. This task requires specific know...

A deep convolutional neural network approach to single-particle recognition in cryo-electron microscopy.

BMC bioinformatics
BACKGROUND: Single-particle cryo-electron microscopy (cryo-EM) has become a mainstream tool for the structural determination of biological macromolecular complexes. However, high-resolution cryo-EM reconstruction often requires hundreds of thousands ...